Sequence
atgc intronic sequence ATGC exonic sequenceATCTATGTAGTTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAGgtctgtagattgtcagtcagagctgcttatcgctgaatttaatttcttcaaccaagttaatattgaacaattctgttgcaggcaataatcaatgatcctt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G106795_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g47110.3 (Oryza sativa), 5'ss of exon 3
----------------------------------------ATCTATGTAGTTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAGgtctg-tagattgtcagtcagagctgcttatcgctgaatttaatttcttcaaccaagttaatattgaacaattctgttgcaggcaataatcaatgatcctt
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CTTATTCCTATATGTTATTTTTGCACGTTCTGATTTGCAGATCTATGTAGTTGATTCATTGGATAGAGAGAGAATCGGAAAAGCGAAAGCGGAGTTTCAGgtttaataagctattt-taagttatgctcatcagatagcttgccttgtt-agtgaagctaaggtttggtggctttgttgcag-------------------
upper sequence: GRMZM2G106795_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g47110.1 (Oryza sativa), 5'ss of exon 4
ATCTATGTAGTTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAGgtctg-tagattgtcagtcagagctgcttatcgctgaatttaatttcttcaaccaagttaatattgaacaattctgttgcaggcaataatcaatgatcctt
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ATCTATGTAGTTGATTCATTGGATAGAGAGAGAATCGGAAAAGCGAAAGCGGAGTTTCAGgtttaataagctattt-taagttatgctcatcagatagcttgccttgtt-agtgaagctaaggtttggtggctttgttgcag-------------------
upper sequence: GRMZM2G106795_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv16s0039g02240.t01 (Vitis vinifera), 5'ss of exon 4
ATCTATGTAGTTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAGgtctgtagattgtcagtcagagctgcttatcgctgaatttaatttcttcaaccaagttaatattgaacaattctgttgcaggcaataatcaatgatcctt
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ATCTATGTTGTTGATTCCTTGGATCGAGAGAGGATTGGAAAAGCAAAGGCAGAGTTTCAGgt-tgggtgtcctagataatgcatttatgtcaaacgtcttaattggtt-gattagtttctcagttagtttacttatttcttctttcag------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16918290|gb|BM073679.1|BM073679EST: TTGATTCATTGGATCGGGAGAGGGTTGGAAAAGCTAAAGCTGAATTTCAG AAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGCCTTGGCCTCTACGAT
genomic: TTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAGgtctgtagat ... ttttttttagAAAGGGGCAATGACACCAATGGAGGTGTGTGAGGGCCTTGGCCTCTACGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCTATGTAGTTGATTCATTGGATCGGGAGAGGATTGGAAAAGCTAAAGCTGAATTTCAGgtctgtagattgtcagtcagagctgcttatcgctgaatttaatttcttcaaccaagttaatattgaacaattctgttgcaggcaataatcaatgatcctt
- - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - AGCTGA