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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACACCGGAGAGATCATGTTTGAGACGTTCAATATGCCTGGCCTCTATATTGCAGTCCAACCTATCCTTGCGCTGGCTTCTGGGTACACTACAACTAAGgttagtcatcggagcttagccttgcacttttgcataggctgataggcatggctgacactaaaatggatggcaattgcattcagcaggccatgtttcagtgtacttgaaaatgttttatcacggtttcccttctttgttgagcgatcatcacactcttatatttatgagaaactttatgttttgttttcag

Basic information

species Zea mays
transcript GRMZM2G106513_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106513_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g38340.1 (Oryza sativa), 5'ss of exon 3
GTACACCGGAGAGATCATGTTTGAGACGTTCAATATGCCTGGCCTCTATATTGCAGTCCAACCTATCCTTGCGCTGGCTTCTGGGTACACTACAACTAAGgttagtcatcggagcttagccttgcacttttgcataggctgataggcatggctgacactaaaatggatggcaattgcattcagcaggccatgttt-cagtgtacttgaaaatgttttatcacg-gtttcccttctttgttgagcgatcatcacactcttatatttatgagaaactttatgttttgttttcag
||||||||| ||||||||||||||||| |||||| ||||||| || || || ||   ||| ||  | ||||| || ||  | || ||||| || || |||||||||     ||||      |    | ||   ||  |        ||||                     |||| | |||   |||||||||||    |||| |||||  |||||||| ||  | || |  | |                                                         
GTACACCGGGGAGATCATGTTTGAGACTTTCAATGTGCCTGGTCTGTACATAGCGTGCCAGCCGGTTCTTGCCCTCGCAGCAGGATACACCACCACAAAGgttagt----agagcaagaatt----ccttgagatgag------aacatg---------------------aatttcgttctcaaggccatgtttatgttgtagttgaac-tgttttattacacgctttcaatatg--------------------------------------------------------