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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTGGTAAAAACGATTGAGATTCTACGGCGCTACTGCCTAAATGATCAACCTGTGAAGTTCCAGGTTGTCAGTGATCAGACAGTTAACTTTCCAAACAGgttccatgctttagcgatactctaaattagagacaacaccatagaagtacttgcagcaatgttgttcacttttgaattcttttgtttcacatatcgtttgtggactagtgaaaatgtgtaaatacatgtatgtgtgttctctagttctcatacgataaaattcttattgcactctcag

Basic information

species Zea mays
transcript GRMZM2G106056_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106056_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g54340.1 (Oryza sativa), 5'ss of exon 4
CCCTGGTAAAAACGATTGAGATTCTACGGCGCTACTGCCTAAATGATCAACCTGTGAAGTTCCAGGTTGTCAGTGATCAGACAGTTAACTTTCCAAACAGgttccatgctttagcgata---ctctaaattagagacaacaccatagaagtacttgcagcaatgttgttcacttttgaattctttt------gtttcacatatcgt----ttgtggactagtg-aaaatgtgtaaatacatgtatgtgtgttctc--tagttctcatacgataaaattcttattgcactctcag
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CCTTAGTTAAGACCATTGAGATTCTACGGCGTTACTGCTTGAATGACCAGCCAGTGAAGTTCCAGGTTGTCAGTGATCAGACAATCAACTTTCCAAACAGgttttgacgatgagttatatcactctatcatgccatttttttcttgagtgtactctaaatttggtgatccctcaatgtaatctttcataaaagtgtcacttttgctgaaatttaggtttgatatatcatacgtgtatgcagatatgcattttccccttaattttcttacatgaattttcttggtacaatcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91052429|gb|EB162847.1|EB162847
EST:     CCTGTGAAGTTCCAGGTTGTCAGTGATCAGACAGTTAACTTTCCAAACAG                         GTTTGGTAAGGTAAATTATGAAGACCCAAACTTTAACGTTGGTCTGCCTGT
genomic: CCTGTGAAGTTCCAGGTTGTCAGTGATCAGACAGTTAACTTTCCAAACAGgttccatgct ... gcactctcagGTTTGGTAAGGTAAATTATGAAGACCCAAACTTTAACGTTGGTCTGCCTGT