Sequence
atgc intronic sequence ATGC exonic sequenceCCTCACTGAGACAGTCATACTGTGGCTCTCAGAAGACCAGGCCTTTTGGGAAGAGATTGAACAAGGAGCAAAGCCTTTAGGCCCCCTAGGTCTGCAACAGgtaaggtcatttccccctttttttactttctttgcttcccaagtgttatttttcaaaaatttcattctttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G105652_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g10110.1 (Oryza sativa), 5'ss of exon 5
CCTCACTGAGACAGTCATACTGTGGCTCTCAGAAGACCAGGCCTTTTGGGAAGAGATTGAACAAGGAGCAAAGCCTTTAGGCCCCCTAGGTCTGCAACAGgtaaggtcatttccccctttttttactttctttgcttcccaagtgttatttttcaaaaatttcattctttgcag
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ACTCACTGAGACAGTCATACTATGGCTCTCAGAGGATCAAGCCTTCTGGGAAGAGATTGAACAGGGACCGAAGCCTTTGGGTCCCCTTGGCCTTCAGCAAgtaaagctcctttcttcttcttctcctttcatgctatcagctgtgattttcatttttcatccc-ttatctgcag
upper sequence: GRMZM2G105652_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G23840.1 (Glycine max), 5'ss of exon 6
CCTCACTGAGACAGTCATACTGTGGCTCTCAGAAGACCAGGCCTTTTGGGAAGAGATTGAACAAGGAGCAAAGCCTTTAGGCCCCCTAGGTCTGCAACAGgtaaggtcatttccccctttttttactttctttgcttcccaagtgttatttttcaaaaatttcattctttgcag---------------------------------------------------------------------------------------------------------
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ACTTACAGAAACTGTTATGTTGTGGCTTTCAGAAGACCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgtatgat-attggaatttgtttattatatcattcatgattttcttttaattttggttactggtaactgttataaacccatatgccaaaatagagaagaattgatgcaaattttccacggttgaaccttgtgaaatgcaaagttcattatggccttataattttttcttatattgtgcag
upper sequence: GRMZM2G105652_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA07G00570.2 (Glycine max), 5'ss of exon 7
CCTCACTGAGACAGTCATACTGTGGCTCTCAGAAGACCAGGCCTTTTGGGAAGAGATTGAACAAGGAGCAAAGCCTTTAGGCCCCCTAGGTCTGCAACAGgtaaggtcatttccccctttttttactttctttgcttcccaagtgttatttttcaaaaatttca-----ttctttgcag---------------------
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ACTTACAGAAACTGTTGTGTTGTGGCTTTCAGAAGACCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgtatgatattggaatttgtttattatatcattaatgttttaattgaggttactggtaactgttagaaacccatatgccaaaacagaaaagaatttatgccMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211049426|gb|FL097873.1|FL097873EST: AAGAGATTGAACAGGGAGCAAAGCCTTTAGGCCCCCTAGGTCTGCAACAG TTCTACCTGGACATGCAATTTGTCATCATATTTGGGCAAGGTCGTTTTCTC
genomic: AAGAGATTGAACAAGGAGCAAAGCCTTTAGGCCCCCTAGGTCTGCAACAGgtaaggtcat ... ttctttgcagTTCTACCTGGACATGCAATTTGTCATCATATTTGGGCAAGGTCGTTTTCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTCACTGAGACAGTCATACTGTGGCTCTCAGAAGACCAGGCCTTTTGGGAAGAGATTGAACAAGGAGCAAAGCCTTTAGGCCCCCTAGGTCTGCAACAGgtaaggtcatttccccctttttttactttctttgcttcccaagtgttatttttcaaaaatttcattctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG