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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAACGAGTGGGTGGTGACGGCGAAGCTCGGCAGCGCCATGAAGATGAAATCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatatgaagcaattaaaatctactgtttccctttcccccaccgccaccggatgctattcccttcaagtcccgcgactaatttccagcgacatgatgcag

Basic information

species Zea mays
transcript GRMZM2G105631_T05
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60353686|gb|DN220659.1|DN220659
EST:     TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG                         GCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
EST: gi|93284005|gb|EB676269.1|EB676269
EST:     TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG                         GCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
EST: gi|60336764|gb|DN203737.1|DN203737
EST:     TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG                         GCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
EST: gi|29544715|gb|CB605095.1|CB605095
EST:     TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG                         GCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
EST: gi|78110271|gb|DV528686.1|DV528686
EST:     TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG                         GCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
EST: gi|76292862|gb|DV032430.1|DV032430
EST:     TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG                         GCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
EST: gi|29167909|gb|CB411169.1|CB411169
EST:     TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG                         GCTGCACGTCACGGAGCTCGGGG
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGG
EST: gi|15427286|gb|BI543108.1|BI543108
EST:     TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG                         GCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
EST: gi|71761578|gb|DR959515.1|DR959515
EST:     TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG                         GCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
EST: gi|116829022|gb|EC863362.1|EC863362
EST:     TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG                         GCTGCACGTCACGGAGCT
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCT
EST: gi|71298388|gb|DR785175.1|DR785175
EST:     TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAG                         GCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG
genomic: TCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatat ... catgatgcagGCTGCACGTCACGGAGCTCGGGGTGGCAGCCTTCCTCTTCTCCTGCGGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAACGAGTGGGTGGTGACGGCGAAGCTCGGCAGCGCCATGAAGATGAAATCGGCTAACAAAGCGGGGCTCAGGAAGCAGTTCATGAGGATATGGGAGAGgtatatatatgaagcaattaaaatctactgtttccctttcccccaccgccaccggatgctattcccttcaagtcccgcgactaatttccagcgacatgatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT