1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAGgtatattttaacagttactacctcgataaatcattgagaatctctaagcatcctacttggaagactagtatttcatattatgctgcttacctactgactt...
species | Zea mays |
transcript | GRMZM2G105523_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAG ACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATACEST: gi|211216156|gb|FL456155.1|FL456155
genomic: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAGgtatatttta ... aaccaagcagACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATAC
EST: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAG ACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATACEST: gi|149080767|gb|EE169832.2|EE169832
genomic: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAGgtatatttta ... aaccaagcagACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATAC
EST: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAG ACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATACEST: gi|111193208|gb|EE291344.1|EE291344
genomic: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAGgtatatttta ... aaccaagcagACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATAC
EST: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAG ACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATACEST: gi|13558763|gb|BG550118.1|BG550118
genomic: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAGgtatatttta ... aaccaagcagACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATAC
EST: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAG ACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATACEST: gi|60348436|gb|DN215409.1|DN215409
genomic: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAGgtatatttta ... aaccaagcagACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATAC
EST: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAG ACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATACEST: gi|211483808|gb|FL459618.1|FL459618
genomic: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAGgtatatttta ... aaccaagcagACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATAC
EST: AGGACACCTATCATATCATCAGATGGAAGCATCTTACACGCAAGACAG ACTACACTGCCAGTGAAGGAGATAAGCAAGTCTCTCCAACAGATGGGATACEST: gi|78105299|gb|DV523717.1|DV523717
genomic: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAGgtatatttta ... aaccaagcagACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATAC
EST: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAG ACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATACEST: gi|211216157|gb|FL456156.1|FL456156
genomic: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAGgtatatttta ... aaccaagcagACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATAC
EST: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAG ACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATACEST: gi|149081866|gb|EE171024.2|EE171024
genomic: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAGgtatatttta ... aaccaagcagACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATAC
EST: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAG ACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATACEST: gi|13198609|gb|BG354411.1|BG354411
genomic: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAGgtatatttta ... aaccaagcagACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATAC
EST: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAG ACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATAC
genomic: AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAGgtatatttta ... aaccaagcagACTACACTGCCAGTGGAGGAGATAAGCAAGTCTCTCCAACAGATGGGATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGACACCTATCATATCGTCAGATGGAAGCATCTTACACGCAAGACAGgtatattttaacagttactacctcgataaatcattgagaatctctaagcatcctacttggaagactagtatttcatattatgctgcttacctactgactt
- - - - - - - - - CAGATG
- - - - - - - - - - GATGGA
- - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacctcg