1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGAGTGTGGGATACTGACTGACGGCGGCGTAGCGATAGAAGGGCCAGAGTTCAGAAACAAAAGCCCAGAGGAGATGAGGGACCTGATACCTAAGATCCAGgtccaattcgatttttcatcagttttctcatatctaccatcaattttctcaactgtatgtacctttcgacactggcag
species | Zea mays |
transcript | GRMZM2G104730_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCAGAAACAAAAGCCCAGAGGAGATGAGGGACCTGATACCTAAGATCCAG GTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTGEST: gi|19821825|gb|BQ047849.1|BQ047849
genomic: TCAGAAACAAAAGCCCAGAGGAGATGAGGGACCTGATACCTAAGATCCAGgtccaattcg ... acactggcagGTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTG
EST: TCAGAAACAAAAGCCCAGAGGAGATGAGGGACCTGATACCTAAGATCCAG GTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTGEST: gi|19057956|gb|BM736623.1|BM736623
genomic: TCAGAAACAAAAGCCCAGAGGAGATGAGGGACCTGATACCTAAGATCCAGgtccaattcg ... acactggcagGTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTG
EST: TCAGAAACAAAAGCCCAGAGGAGATGAGGGACCTGATACCTAAGATCCAG GTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTGEST: gi|87152785|gb|DY397574.1|DY397574
genomic: TCAGAAACAAAAGCCCAGAGGAGATGAGGGACCTGATACCTAAGATCCAGgtccaattcg ... acactggcagGTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTG
EST: TCAGAAACAAAAGCCCAGAGGAGATGAGGGACCTGATACCTAAGATCCAG GTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTG
genomic: TCAGAAACAAAAGCCCAGAGGAGATGAGGGACCTGATACCTAAGATCCAGgtccaattcg ... acactggcagGTTATGGCTCGTTCTCTGCCGCTTGACAAGCATACCCTTGTGAAAAACCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGTGTGGGATACTGACTGACGGCGGCGTAGCGATAGAAGGGCCAGAGTTCAGAAACAAAAGCCCAGAGGAGATGAGGGACCTGATACCTAAGATCCAGgtccaattcgatttttcatcagttttctcatatctaccatcaattttctcaactgtatgtacctttcgacactggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG