1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCGTAAAGGAGGAAGTTCCTTGGCCCCACCTTTCCCATCTCCATGTACTTTGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAGgtccacatgacttataagcattttcaattttcttgtgatcgtttgactaatctttgaatgacgttatcatctcag
species | Zea mays |
transcript | GRMZM2G104294_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGTTTACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAG GCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAAEST: gi|194716812|gb|FK933971.1|FK933971
genomic: TGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAGgtccacatga ... atcatctcagGCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAA
EST: TGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAG GCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAAEST: gi|32921358|gb|CF026170.1|CF026170
genomic: TGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAGgtccacatga ... atcatctcagGCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAA
EST: TGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAG GCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAAEST: gi|32832538|gb|CD972216.1|CD972216
genomic: TGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAGgtccacatga ... atcatctcagGCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAA
EST: TGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAG GCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAAEST: gi|32929828|gb|CF034640.1|CF034640
genomic: TGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAGgtccacatga ... atcatctcagGCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAA
EST: TGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAG GCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAAEST: gi|67024128|gb|CO452877.1|CO452877
genomic: TGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAGgtccacatga ... atcatctcagGCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAA
EST: TGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAG GCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAAEST: gi|22819046|gb|BU499136.1|BU499136
genomic: TGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAGgtccacatga ... atcatctcagGCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAA
EST: TGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAG GCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAAEST: gi|32921381|gb|CF026193.1|CF026193
genomic: TGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAGgtccacatga ... atcatctcagGCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAA
EST: TGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAG GCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAAEST: gi|211465905|gb|FL134197.1|FL134197
genomic: TGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAGgtccacatga ... atcatctcagGCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAA
EST: TGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAG GCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAAEST: gi|32928791|gb|CF033603.1|CF033603
genomic: TGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAGgtccacatga ... atcatctcagGCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAA
EST: TGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAG GCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAA
genomic: TGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAGgtccacatga ... atcatctcagGCTGCTTTGCTTGCTTTAGCTTCTCATGCATCTGATCCAGCTGAAGCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGTAAAGGAGGAAGTTCCTTGGCCCCACCTTTCCCATCTCCATGTACTTTGCGGACTGCGCTTCTACGATATGCTGATCTACTCAATCCACCGAAGAAGgtccacatgacttataagcattttcaattttcttgtgatcgtttgactaatctttgaatgacgttatcatctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG