1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCCCTTGATTCATTTAATGCTGAAAGTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAGgtaacatactttttcgcaagcataggtttttaaatcttcttccatgttgttaatacaattttaatgctttttaaatgcatacctgcaccagataaacaca...
species | Zea mays |
transcript | GRMZM2G104166_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAG ATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGGEST: gi|20208377|gb|BQ134466.1|BQ134466
genomic: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAGgtaacatact ... tgaaacacagATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGG
EST: GTCAGCTGGTGACATTGTAATTGTCCGAAAG ATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGGEST: gi|5915494|gb|AW053135.1|AW053135
genomic: GTCAGCTGGTGACATTGTAATTGTCCGAAAGgtaacatact ... tgaaacacagATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGG
EST: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAG ATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGGEST: gi|5895761|gb|AW037007.1|AW037007
genomic: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAGgtaacatact ... tgaaacacagATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGG
EST: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAG ATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGG
genomic: GTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAGgtaacatact ... tgaaacacagATCTCAAGCAATGGTTGGGCAGAAGGTGAATGCAAGGGCAAAGCAGGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCTTGATTCATTTAATGCTGAAAGTGAGTTTGAGCTTACCTTGTCAGCTGGTGACATTGTAATTGTCCGAAAGgtaacatactttttcgcaagcataggtttttaaatcttcttccatgttgttaatacaattttaatgctttttaaatgcatacctgcaccagataaacaca
- - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - CAGCTG