1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGTATCAGGCCTGATAGTACCTGCAGCAACTGTAGGAGCACTGGGTTACGGTTATATGTGGTGGAAGgtatgtttctcccttttatcgctgcttctatgtattcttggttgttcgtaatttctttgacattttaactgctgacattgtaggatctgtctgctttctc...
species | Zea mays |
transcript | GRMZM2G104133_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TACCTGCAGCAACTGTAGGAGCACTGGGTTACGGTTATATGTGGTGGAAG GGGATCTCGTTCTCAGATCTEST: gi|211170338|gb|FK988420.1|FK988420
genomic: TACCTGCAGCAACTGTAGGAGCACTGGGTTACGGTTATATGTGGTGGAAGgtatgtttct ... tcatggccagGGGATCTCGTTCTCAGATCT
EST: TACCTGCAGCAACTGTAGGAGCACTGGGTTACGGTTATATGTGGTGGAAG GGGATCTCGTTCTCAGATCTAATGTATGTCACCAAGCGCEST: gi|211170331|gb|FK988413.1|FK988413
genomic: TACCTGCAGCAACTGTAGGAGCACTGGGTTACGGTTATATGTGGTGGAAGgtatgtttct ... tcatggccagGGGATCTCGTTCTCAGATCTAATGTATGTCACCAAGCGC
EST: TACCTGCAGCAACTGTAGGAGCACTGGGTTACGGTTATATGTGGTGGAAG GGGATCTCGTTCTCAGATCTAATGTATGTCACCAAGCGCAACATGGCAEST: gi|211170336|gb|FK988418.1|FK988418
genomic: TACCTGCAGCAACTGTAGGAGCACTGGGTTACGGTTATATGTGGTGGAAGgtatgtttct ... tcatggccagGGGATCTCGTTCTCAGATCTAATGTATGTCACCAAGCGCAACATGGCA
EST: TACCTGCAGCAACTGTAGGAGCACTGGGTTACGGTTATWTGTGGTGGAAG GGGATCTCGTTCTCAGATCTEST: gi|211170339|gb|FK988421.1|FK988421
genomic: TACCTGCAGCAACTGTAGGAGCACTGGGTTACGGTTATATGTGGTGGAAGgtatgtttct ... tcatggccagGGGATCTCGTTCTCAGATCT
EST: TACCTGCAGCAACTGTAGGAGCACTGGGTTACGGTTATATGTGGTGGAAG GGGATCTCGTTCTCAEST: gi|211170333|gb|FK988415.1|FK988415
genomic: TACCTGCAGCAACTGTAGGAGCACTGGGTTACGGTTATATGTGGTGGAAGgtatgtttct ... tcatggccagGGGATCTCGTTCTCA
EST: TACCTGCAGCAACTGTAGGAGCACTGGGTTACGGTTATATGTGGTGGAAG GGGATCTCGTTCTCAGATCTAATGTATGTCA
genomic: TACCTGCAGCAACTGTAGGAGCACTGGGTTACGGTTATATGTGGTGGAAGgtatgtttct ... tcatggccagGGGATCTCGTTCTCAGATCTAATGTATGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTATCAGGCCTGATAGTACCTGCAGCAACTGTAGGAGCACTGGGTTACGGTTATATGTGGTGGAAGgtatgtttctcccttttatcgctgcttctatgtattcttggttgttcgtaatttctttgacattttaactgctgacattgtaggatctgtctgctttctc
- - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG