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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCATCGTCATGTCCTACGCTGCCAAGCACCTGACGCCCGTGGTCTTGGAGCTCGGTGGCAAATGCCCTGTCGTCGTCGACTCCGACGTCAACCTCCACgtaaagagcaccccggccgcccgtctctctctctatatctctctctgattatgatggattcgtcataatgctcaatgaag

Basic information

species Zea mays
transcript GRMZM2G103546_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G103546_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os12g07810.1 (Oryza sativa), 5'ss of exon 5
ACGCATCGTCATGTCCTACGCTGCCAAGCACCTGACGCCCGTGGTCTTGGAGCTCGGTGGCAAATGCCCTGTCGTCGTCGACTCCGACGTCAACCTCCACgtaa--agagcaccccg-gccgcccgtctctctctctatatctctctctg---attatgatggattcg---tcataatgctcaatgaag-----------
||||||||| ||| | |  || || |||||||||||||| |||||| |||||||||| || |||||||| || || ||||||||  | ||||||||||| ||||  | |||||  |      ||| ||| |   | |  || |  | |     | | || ||  |  |   |    |  | ||  | |            
ACGCATCGTGATGGCGTCGGCGGCGAAGCACCTGACGCCGGTGGTCCTGGAGCTCGGCGGAAAATGCCCGGTTGTTGTCGACTCTAATGTCAACCTCCATgtaagcaaagcacaacacaattcccctctatgaatttgcattttgcaccataaactttggtgtttcaggatttgctacccccatgggacactgagaccta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78082053|gb|DV510465.1|DV510465
EST:     AGCTCGGTGGCAAATGCCCTGTCGTCGTCGACTCCGACGTCAACCTCCAC                         GTCGCTGCCAAGAGGATCGCCGCCGGCAAGTGGGGCTGCAACAGCGGCCAA
genomic: AGCTCGGTGGCAAATGCCCTGTCGTCGTCGACTCCGACGTCAACCTCCACgtaaagagca ... ctcaatgaagGTCGCTGCCAAGAGGATCGCCGCCGGCAAGTGGGGCTGCAACAGCGGCCAA
EST: gi|71439164|gb|DR820214.1|DR820214
EST:     AGCTCGGTGGCAAATGCCCTGTCGTCGTCGACTCCGACGTCAACCTCCAC                         GTCGCTGCCAAGAGGATCGCCGCCGGCAAGTGGGGCTGCAACAGCGGCCAA
genomic: AGCTCGGTGGCAAATGCCCTGTCGTCGTCGACTCCGACGTCAACCTCCACgtaaagagca ... ctcaatgaagGTCGCTGCCAAGAGGATCGCCGCCGGCAAGTGGGGCTGCAACAGCGGCCAA