1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTGTTTGTTGGGAATGTGCCCAAGGGGCTGAGCGAGGAGGAGCTTACCAACACTATCAAGGGGAAGGGTCCAGGTGTTATCAACATTGAGATGTTTAAGgtgtgctttgtggtttcgtgcttgttttcgtttgtacaccacaagttccagattcactaatattgagatgctgtttgcacaggatcag
species | Zea mays |
transcript | GRMZM2G103430_T04 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGTGTTATCAACATTGAGATGTTTAAGGATCAGEST: gi|28910015|gb|CB331214.1|CB331214
genomic: GGTGTTATCAACATTGAGATGTTT----A--AGgtgtgctttg ... acagg
EST: ACACTATCAAGGGGAAGGGTCCAGGTGTTATCAACATTGAGATGTTTAAGGATCAGEST: gi|211538187|gb|FL238623.1|FL238623
genomic: ACACTATCAAGGGGAAGGGTCCAGGTGTTATCAACATTGAGATGTTT----A--AGgtgtgctttg ... acagg
EST: ACACTATCAAGGGGAAGGGTCCAGGTGTTATCAACATTGAGATGTTTAAG GEST: gi|211538187|gb|FL238623.1|FL238623
genomic: ACACTATCAAGGGGAAGGGTCCAGGTGTTATCAACATTGAGATGTTTAAGgtgtgctttg ... acaggatcag-
EST: ACACTATCAAGGGGAAGGGTCCAGGTGTTATCAACATTGAGATGTTTAAG GEST: gi|211538187|gb|FL238623.1|FL238623
genomic: ACACTATCAAGGGGAAGGGTCCAGGTGTTATCAACATTGAGATGTTTAAGgtgtgctttg ... acaggatcag-
EST: ACACTATCAAGGGGAAGGGTCCAGGTGTTATCAACATTGAGATGTTTAAG GEST: gi|211538187|gb|FL238623.1|FL238623
genomic: ACACTATCAAGGGGAAGGGTCCAGGTGTTATCAACATTGAGATGTTTAAGgtgtgctttg ... acaggatcag-
EST: ACACTATCAAGGGGAAGGGTCCAGGTGTTATCAACATTGAGATGTTTAAG G
genomic: ACACTATCAAGGGGAAGGGTCCAGGTGTTATCAACATTGAGATGTTTAAGgtgtgctttg ... acaggatcag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGTTTGTTGGGAATGTGCCCAAGGGGCTGAGCGAGGAGGAGCTTACCAACACTATCAAGGGGAAGGGTCCAGGTGTTATCAACATTGAGATGTTTAAGgtgtgctttgtggtttcgtgcttgttttcgtttgtacaccacaagttccagattcactaatattgagatgctgtttgcacaggatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG