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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTTAAGTAATAACAACTTGAGTGGTTCGATACCCCCGGAAGTTATTAATCTTTCCAAACTGGAAACATGgtgataaccgaacttgttcccctaaatatgaacctgttattgttggatgccattaatttaatctactgcttacagatggtttaattttccaatttaattg...

Basic information

species Zea mays
transcript GRMZM2G103033_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G103033_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g07130.1 (Oryza sativa), 5'ss of exon 4
GGATTTAAGTAATAACAACTTGAGTGGTTCGATACCCCCGGAAGTTATTAATCTTTCCAAACTGGAAACATGgtgataaccgaac------ttgttcccctaaatatgaacctgttattgttggatgccattaatttaatctactgcttacagatggtttaattttccaatttaattg
||||||||||||||||||| ||| ||||   ||||| ||  |||| |  ||||| ||||| |||||||||||||||| |   |||      |||||||  |  |   | |    | | | ||  | |   ||||||   |    | |||  | |||||  |    ||||| ||  |||
GGATTTAAGTAATAACAACCTGATTGGTCAAATACCTCCCCAAGTCAGCAATCTATCCAAGCTGGAAACATGgtgattatgaaacaactttttgttcctttgcagcagcattcatcaattttataagaacttaattgcgttacattcttgta-atggtaca----tccaacttg-ttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13316130|gb|BG410577.1|BG410577
EST:     TTTCCAAACTGGAAACATG                         CTAGGCACTTCAATAATAATCCTCTCAGTGGAGGTTTTCCTCATGAACTGT
genomic: TTTCCAAACTGGAAACATGgtgataaccg ... ctccatatagCTAGGCACTTCAATAATAATCCTCTCAGTGGAGGTTTTCCTCATGAACTGT
EST: gi|211450628|gb|FL309615.1|FL309615
EST:     AGTGGTTCGATACCCCCGGAAGTTATTAATCTTTCCAAACTGGAAACATG                         CTAGGCACTTCAATAATAATCCTCTCAGTGGAGGTTTTCCTCATGAACTGT
genomic: AGTGGTTCGATACCCCCGGAAGTTATTAATCTTTCCAAACTGGAAACATGgtgataaccg ... ctccatatagCTAGGCACTTCAATAATAATCCTCTCAGTGGAGGTTTTCCTCATGAACTGT
EST: gi|37425181|gb|CF650327.1|CF650327
EST:     AGTGGTTCGACACCCCCGGAAGTTATTAATCTTTCCAAACTGGAAACA--                         -T-GGCACTTCAATAATAATCCTCTCAGTGGAGGTTTTCCTCATGAACTGT
genomic: AGTGGTTCGATACCCCCGGAAGTTATTAATCTTTCCAAACTGGAAACATGgtgataaccg ... ctccatatagCTAGGCACTTCAATAATAATCCTCTCAGTGGAGGTTTTCCTCATGAACTGT
EST: gi|211178693|gb|FL329875.1|FL329875
EST:     AGTGGTTCGATACCCCCGGAAGTTATTAATCTTTCCAAACTGGAAACATG                         ---G-CACTTCAATAATAATCCTCTCAGTGGAGCTTTTCCTCATGAACTGT
genomic: AGTGGTTCGATACCCCCGGAAGTTATTAATCTTTCCAAACTGGAAACATGgtgataaccg ... ctccatatagCTAGGCACTTCAATAATAATCCTCTCAGTGGAGGTTTTCCTCATGAACTGT
EST: gi|211258292|gb|FL356006.1|FL356006
EST:     AGTGGTTCGATACCCCCGGAAGTTATTAATCTTTCCAAACTGGAAACATG                         CTAGGCACTTCAATAATAATCCTCTCAGTGGAGGTTTTCCTCATGAACTGT
genomic: AGTGGTTCGATACCCCCGGAAGTTATTAATCTTTCCAAACTGGAAACATGgtgataaccg ... ctccatatagCTAGGCACTTCAATAATAATCCTCTCAGTGGAGGTTTTCCTCATGAACTGT