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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATTAAGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctcttcatctgtagtattttatcattgtggctttgaaaaatcaaatatcatttgaacacaacatgattttgtttctttttccag

Basic information

species Zea mays
transcript GRMZM2G102639_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G102639_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os10g31900.1 (Oryza sativa), 5'ss of exon 4
GCTATTAAGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctcttcatctgtagtattttatcattgtggctttgaaaaatcaaatatcatttgaacacaacatgattttgt-ttctttttccag----------
|||||||||| |||||| |||||||| |||||||| || || ||||||||||||||||||  | |   |  | | || | |  | |   | |       |    ||   | |  ||  | |  |   || |  ||  | | ||   | |          
GCTATTAAGATTTTGAATATGATCAAGCTATATGGAAAACCAATAAGAGTAAACAAGgtaagtacctct--tttataatctcctctgcctcttttcagtacttctctcttgtatttctagccaagggtgctcgtgggtcccttgaactgctgaatttgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26558877|gb|CA831112.1|CA831112
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|78090866|gb|DV519240.1|DV519240
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|91056510|gb|EB166928.1|EB166928
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|148943004|gb|EC888052.2|EC888052
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|87157489|gb|DY402278.1|DY402278
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|33467168|gb|CF244217.1|CF244217
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|148956981|gb|EC902927.2|EC902927
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|148933043|gb|EE285938.2|EE285938
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|78124664|gb|DV543048.1|DV543048
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGAAAACAAG                         GCTTCCCAGGATAAAAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|50322326|gb|CO517452.1|CO517452
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|89762379|gb|DY689990.1|DY689990
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|94477767|gb|EB706725.1|EB706725
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|76288123|gb|DV027691.1|DV027691
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|71425499|gb|DR806709.1|DR806709
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|31355533|gb|CD439890.1|CD439890
EST:     GACTTTGAACATGATCAAACTAT-TCGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: GACTTTGAACATGATCAAACTATAT-GGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|76291455|gb|DV031023.1|DV031023
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|76015742|gb|DT942912.1|DT942912
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|76290093|gb|DV029661.1|DV029661
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|148961210|gb|EE011925.2|EE011925
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTTGGAGCAAATCCTGTTTATTG
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTT-GGAGCAAATC-TGTTTATTG
EST: gi|86472905|gb|DY239275.1|DY239275
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAGG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|78124734|gb|DV543118.1|DV543118
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAAAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
EST: gi|148938096|gb|EC882358.2|EC882358
EST:     AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAG                         GCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC
genomic: AGACTTTGAACATGATCAAACTATATGGGAAGCCCATAAGAGTAAACAAGgtattttctc ... ctttttccagGCTTCCCAGGATAAGAAGAGCTTGGACGTTGGAGCAAATCTGTTTATTGGC