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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTCCTTATATAATGTACCGCAATGCTGCTCAAGAAGTTATAGGAATCTGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAGgtatcagttgcaaacttgtaattattactcctgcttgtgtctttagggctcttgtcatgaatgtttaatcaagttattaagttttttcattcttctgata...

Basic information

species Zea mays
transcript GRMZM2G101596_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101596_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g14580.1 (Oryza sativa), 5'ss of exon 4
AAGCTCCTTATATAATGTACCGCAATGCTGCTCAAGAAGTTATAGGAATCTGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAGgtatcagttgcaaacttgtaattattactcctgcttgtgtctttagggctcttgtcatgaatgtttaatcaagttattaagttttt----tcattcttctgata
| | ||| ||||||||||| ||||||||||| ||||||||||| || || |||||||| ||||||||||| ||  || | |||||||||||||| ||||||||  | || |  | ||   |  | || | || |||  ||| ||   |   ||    |   |||   | |  | |  ||  || ||    |   |  |||| | 
AGGTTCCCTATATAATGTATCGCAATGCTGCACAAGAAGTTATTGGCATTTGGTTTTATAATTCCCAGGAATGCGAAGAAGTTGCAAATCTTTTTAGCAGgta--aatt-cgtatttcctacaaataatgctcctttagtccttttagactttagtgtctttgtg-gaccgtgctcctagtttcttgttgtagattgtctggtt

upper sequence: GRMZM2G101596_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA19G38280.1 (Glycine max), 5'ss of exon 4
AAGCTCCTTATATAATGTACCGCAATGCTGCTCAAGAAGTTATAGGAATCTGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAGgtatcagttgcaaacttgtaattattactcctgcttgtgtctttagggctcttgtcatgaatgttta-atcaagttattaagtt----ttttcattcttctgata
||   || ||  |  |||| || |||||||||||||||||||  ||||| |||||||||||| |  | || ||| || | ||||||||||| || | |||||||     | ||  |  ||||| |  |  ||     | |   ||| | | || |  ||  ||||||     |    || ||||     || ||   | || || 
AAAAGCCGTACCTGTTGTATCGGAATGCTGCTCAAGAAGTTAACGGAATATGGTTTTACAATCCAGATGAATGTGAAGAAGTTGCAAATCTCTTTAACAGgtatg----gtaatttattaattttctccactcaagttattcatagtgtttttctt-tgcttgtttatgctgaaacttttagttacaacttacaagatgctaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93282402|gb|EB674666.1|EB674666
EST:     TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAG                         GATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
genomic: TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAGgtatcagttg ... cactgtgcagGATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
EST: gi|13125936|gb|BG316611.1|BG316611
EST:     TGGTTTTACAATTCCCAGGAGTGTCAACAGGCTGCAAATCTTTTCAGCAG                         GATTCTGAATG
genomic: TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAGgtatcagttg ... cactgtgcagGATTCTGAATG
EST: gi|91056521|gb|EB166939.1|EB166939
EST:     TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAG                         GATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
genomic: TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAGgtatcagttg ... cactgtgcagGATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
EST: gi|211391326|gb|FK987375.1|FK987375
EST:     TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAG                         GATTCTGAATGCTTTCT
genomic: TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAGgtatcagttg ... cactgtgcagGATTCTGAATGCTTTCT
EST: gi|76928738|gb|DV171746.1|DV171746
EST:     TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAG                         GATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
genomic: TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAGgtatcagttg ... cactgtgcagGATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
EST: gi|93281394|gb|EB673658.1|EB673658
EST:     TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAG                         GATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
genomic: TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAGgtatcagttg ... cactgtgcagGATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
EST: gi|211393955|gb|FK987391.1|FK987391
EST:     TGGTTTTACATTTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAG                         GATTCTGAATGCTTTCCTCAAAGGTGGCACCAAAGCCGAAAAATTCCTTCT
genomic: TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAGgtatcagttg ... cactgtgcagGATTCTGAATGCTTTC-TCAAAGGTGGCACCAAAGCCGAAAA-TTCCTTCT
EST: gi|76010496|gb|DT937666.1|DT937666
EST:     TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAG                         GATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
genomic: TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAGgtatcagttg ... cactgtgcagGATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
EST: gi|76909432|gb|DV163378.1|DV163378
EST:     TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAG                         GATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
genomic: TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAGgtatcagttg ... cactgtgcagGATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
EST: gi|91048464|gb|EB158882.1|EB158882
EST:     TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAG                         GATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
genomic: TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAGgtatcagttg ... cactgtgcagGATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
EST: gi|76011730|gb|DT938900.1|DT938900
EST:     TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAG                         GATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
genomic: TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAGgtatcagttg ... cactgtgcagGATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
EST: gi|89758076|gb|DY687416.1|DY687416
EST:     TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAG                         GATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
genomic: TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAGgtatcagttg ... cactgtgcagGATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
EST: gi|148999366|gb|EE036307.2|EE036307
EST:     TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAG                         GATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
genomic: TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAGgtatcagttg ... cactgtgcagGATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
EST: gi|211393950|gb|FK987386.1|FK987386
EST:     TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAG                         GATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
genomic: TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAGgtatcagttg ... cactgtgcagGATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
EST: gi|78114665|gb|DV533053.1|DV533053
EST:     TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAG                         GATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT
genomic: TGGTTTTACAATTCCCAGGAGTGTCAACAGGTTGCAAATCTTTTCAGCAGgtatcagttg ... cactgtgcagGATTCTGAATGCTTTCTCAAAGGTGGCACCAAAGCCGAAAATTCCTTCTGT