1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CCATGGTATGCCTACACAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctcaagatttcttgtcacatcatgctactcttcaaccccacatatgaagttccggatttgctttcctcagatttcatgaatatctaagagtatgcttcatccatttttgcttatgaattggattctcgtactgatcag
species | Zea mays |
transcript | GRMZM2G101217_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGATEST: gi|211153475|gb|FL406036.1|FL406036
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGAT
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCYTTCAGTCCCATTGAAG ATATACGAGATTGGEST: gi|211057983|gb|FL426573.1|FL426573
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGG
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCEST: gi|211269212|gb|FL410574.1|FL410574
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTC
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCEST: gi|76924073|gb|DV169790.1|DV169790
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGC
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGATEST: gi|93012306|gb|EB637826.1|EB637826
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGAT
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGATEST: gi|71312573|gb|DR792811.1|DR792811
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGAT
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGATEST: gi|50325602|gb|CO520728.1|CO520728
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGAT
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGATEST: gi|211209580|gb|FL394645.1|FL394645
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGAT
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGAEST: gi|89250708|gb|DY622494.1|DY622494
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGA
EST: CAATAGCAGCATCCATTCTGCGTACAGCAAATCTTTCAGTCCCCTTGAAG ATATACCAGATTGGTGGTGGGTCTGGEST: gi|37417541|gb|CF646424.1|CF646424
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGG
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGATEST: gi|93012540|gb|EB638060.1|EB638060
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGAT
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGATEST: gi|101391071|gb|EB817469.1|EB817469
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGAT
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGATEST: gi|211197467|gb|FL425782.1|FL425782
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGAT
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCEST: gi|211164475|gb|FL391064.1|FL391064
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGC
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTEST: gi|211428747|gb|FL388358.1|FL388358
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTT
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAEST: gi|211524044|gb|FL387968.1|FL387968
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAA
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGATEST: gi|76281532|gb|DV021100.1|DV021100
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGAT
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGATEST: gi|148959299|gb|EE010710.2|EE010710
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGAT
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGATEST: gi|148960597|gb|EE011219.2|EE011219
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGAT
EST: ATAGCAGCATCGATTCTGCGTACAGCAAATTCTTTCAGTCCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGAEST: gi|211085712|gb|FL420035.1|FL420035
genomic: ATAGCAGCATCGATTCTGCGTACAGCAAAT-CTTTCAGTCCC-ATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGA
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGGAACATGCGCAAAGTGCATACTTGEST: gi|71418854|gb|DR804568.1|DR804568
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGG-AACATGCGCAAAGTGCATACTTG
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGATEST: gi|50337135|gb|CO532261.1|CO532261
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGAT
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGATEST: gi|71327533|gb|DR800378.1|DR800378
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGAT
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGATEST: gi|50336106|gb|CO531232.1|CO531232
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGAT
EST: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAG ATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGAT
genomic: CAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctc ... tactgatcagATATACGAGATTGGTGGTGGCTCTGGAACATGCGCAAAGTGCATACTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATGGTATGCCTACACAATAGCAGCATCGATTCTGCGTACAGCAAATCTTTCAGTCCCATTGAAGgtgtggtctcaagatttcttgtcacatcatgctactcttcaaccccacatatgaagttccggatttgctttcctcagatttcatgaatatctaagagtatgcttcatccatttttgcttatgaattggattctcgtactgatcag
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