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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACAGATGCTGTTGTAGTTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAGgtgaattgagaactagaattctagaaattacaggacgtttgctgaatgttactgttccaaaatggcttgacttcaaatttcgtatgcag

Basic information

species Zea mays
transcript GRMZM2G101181_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101181_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g46570.1 (Oryza sativa), 5'ss of exon 4
ATAACAGATGCTGTTGTAGTTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAGgtgaattgagaact-agaattctag------------aaattacaggacgtttgctgaatgttactgttccaaaatggcttgacttcaaatttcgtatgcag
||||||||||||||||| || ||| | || |||||||||||||||||||||||||||||||| |||||||| |||||||| || || |||| | |||||| || | |||| ||             | |||| | ||| ||     | ||      |||  | ||   |  |  | ||  |    ||  | 
ATAACAGATGCTGTTGTTGTCGCCCGAATATTGAATGCCACACTTGTTGTACCTGAGTTAGATCACCACTCATTCTGGAAGGATGATAGgtaagttgagaccttaaaattatacttcctccatttcatattataagactttctagcattgcccacattcacatatatgtcaa--tgaatctagacatatat

upper sequence: GRMZM2G101181_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA05G04720.1 (Glycine max), 5'ss of exon 4
ATAACAGATGCTGTTGTAGTTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAGgtgaattgagaactagaattctagaaattacaggacgtttgctgaatgttactgttccaaaatggcttgacttca----aatttcgt----atgcag
||||||||||| ||||| |||||  | ||| | ||||| ||||| |||||||||||||| || || || || || |||||||| |||||||   |  ||| |      |  |   ||||       |      ||    ||      || |    ||   || |    | ||| ||    ||||||
ATAACAGATGCAGTTGTTGTTGCAAGAATTCTTAATGCTACACTAGTTGTACCTGAGTTGGATCATCAATCTTTTTGGAAAGATGACAGgtatctgcagatcctatcattcattcattattctgattagaactaacaacaccaagttaacaatttttcttttgatgacatttttgtttgaatgcag

upper sequence: GRMZM2G101181_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA11G03640.1 (Glycine max), 5'ss of exon 5
ATAACAGATGCTGTTGTAGTTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAGgtgaattg-agaactagaattctagaaattacaggacgtttgctgaatgttactgttccaaaatggcttgacttcaaatttcgtatgcag
||||||||||||||||| |||||| | ||| | ||||||||||| || ||||| ||||| || || || || |  ||||| || ||||||| | ||| ||  |         |   |  |   ||     | |   || | |  ||   ||| |||   | ||     || | || |||
ATAACAGATGCTGTTGTTGTTGCCCGAATTCTTAATGCCACACTAGTAGTACCGGAGTTGGATCATCATTCTTATTGGAAGGATGACAGgtaatttgcagttcctttgacgcattcaccatgagaatcaagtttgttggttcatttaataaaaggc---atttttg--tttgaatacag

upper sequence: GRMZM2G101181_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA01G41740.1 (Glycine max), 5'ss of exon 4
ATAACAGATGCTGTTGTAGTTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAGgtgaattg-agaactagaattctagaaattacaggacgtttgctgaatgttactgttccaaaatggcttgacttcaaatttcgtatgcag
||||||||||||||||| |||||  | ||| | ||||||||||| || ||||||||||| || || || || |  |||||||| ||||||| | ||| ||  |         |   |  |   |||    | |   ||||  |      |||||     | ||     || | || |||
ATAACAGATGCTGTTGTTGTTGCACGAATTCTTAATGCCACACTAGTAGTACCTGAGTTGGATCATCATTCTTATTGGAAAGATGACAGgtaatttgcagttcctttcactcattcaccatgagactcaagtt---tgttggttcatttaaatgaaggcatttttg--tttgaatacag

upper sequence: GRMZM2G101181_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv00s0229g00100.t01 (Vitis vinifera), 5'ss of exon 4
ATAACAGATGCTGTTGTAGTTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAGgtgaattgagaa-ctagaattctagaaattacaggacgtttgctgaatgttactgttccaaaatggcttgacttcaaatttcgtatgcag---------------------
||||| |||||||| ||||||||  ||||| | ||||| ||| | |||||||| ||||| || || || || ||||||||||| || |||||| ||||||  |||  |   |||  ||      |  ||  ||   |   | |  |   || |  |   |     | | ||  |                          
ATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAGgtgagttgagattctatcaacttagtcatagtgacat-ttaacttggttgcaataatgagaattaaccatatgatcattctctcacttgagttctgttatttacgatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67022216|gb|CO450965.1|CO450965
EST:     ACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAG                         TGACTTCTCTGACATTTTTGACGTGGAGTGGTTCATTTCCCACCTATCGAA
genomic: ACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAGgtgaattgag ... tcgtatgcagTGACTTCTCTGACATTTTTGACGTGGAGTGGTTCATTTCCCACCTATCGAA
EST: gi|76282456|gb|DV022024.1|DV022024
EST:     ACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAG                         TGACTTCTCTGACATTTTTGACGTGGAGTGGTTCATTTCCCACCTATCGAA
genomic: ACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAGgtgaattgag ... tcgtatgcagTGACTTCTCTGACATTTTTGACGTGGAGTGGTTCATTTCCCACCTATCGAA
EST: gi|148935747|gb|EC879791.2|EC879791
EST:     ACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAG                         TGACTTCTCTGACATTTTTGACGTGGAGTGGTTCATTTCCCACCTATCGAA
genomic: ACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAGgtgaattgag ... tcgtatgcagTGACTTCTCTGACATTTTTGACGTGGAGTGGTTCATTTCCCACCTATCGAA