1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CCATCTGCGTCGCCGCCATCCTCGGCTCCACGCTCAACGGCGAGTTCGAGGACGTCAAGCTGCTCAGCGACCTGCTCACGGCCAAGAACGCCGAGACAGGgtgggtgcgccatctcattaattctcgctttctcaggcctaattaaactgacggcttcgtttccgccag
species | Zea mays |
transcript | GRMZM2G101069_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACGTCAAGCTGCTCAGCGACCTGCTCACGGGCCA-GAACGCCGAGACAGG GTGGGACACCCCGATCCACGTGGACGCGGCGAGCGGCGGCTTCATCGCACCEST: gi|74242398|gb|DT650312.1|DT650312
genomic: ACGTCAAGCTGCTCAGCGACCTGCTCACGG-CCAAGAACGCCGAGACAGGgtgggtgcgc ... tttccgccagGTGGGACACCCCGATCCACGTGGACGCGGCGAGCGGCGGCTTCATCGCACC
EST: GACGTCAAGCTGCTCAGCGACCTGCTCACGGCCAAGAACGCCGAGACAGG GTGGGACACCCCGATEST: gi|71765903|gb|DR963840.1|DR963840
genomic: GACGTCAAGCTGCTCAGCGACCTGCTCACGGCCAAGAACGCCGAGACAGGgtgggtgcgc ... tttccgccagGTGGGACACCCCGAT
EST: GACGTCAAGCTGCTCAGCGACCTGCTCACGGCCAAGAACGCCGAGACAGG GTGGGACACCCCGATCCACEST: gi|6127265|gb|AW129790.1|AW129790
genomic: GACGTCAAGCTGCTCAGCGACCTGCTCACGGCCAAGAACGCCGAGACAGGgtgggtgcgc ... tttccgccagGTGGGACACCCCGATCCAC
EST: GACGTCAAGCTGCTCAGCGACCTGCTCACGGCCAAGAACGCCGAGACAGG GTGGGACACCCCGATCCACGTGGACGCGGCGAGCGGCGGCTTCATCGCGCC
genomic: GACGTCAAGCTGCTCAGCGACCTGCTCACGGCCAAGAACGCCGAGACAGGgtgggtgcgc ... tttccgccagGTGGGACACCCCGATCCACGTGGACGCGGCGAGCGGCGGCTTCATCGCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATCTGCGTCGCCGCCATCCTCGGCTCCACGCTCAACGGCGAGTTCGAGGACGTCAAGCTGCTCAGCGACCTGCTCACGGCCAAGAACGCCGAGACAGGgtgggtgcgccatctcattaattctcgctttctcaggcctaattaaactgacggcttcgtttccgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC