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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAAGGGCAGAAGGACTCTGCCCAGGAAGGCTTCAATGTTGGGTTCAGGCAATCTGTAAACGTTGGCTACAAATGGGGCCTTGTTCGTGGGGTTGGCAGgtgcatttcctctatccttccaataatagatgtcttgtattatcattctattctagtgtttccttggattttaattttccatctgtcatcttttcaagcag

Basic information

species Zea mays
transcript GRMZM2G101053_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101053_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g72200.1 (Oryza sativa), 5'ss of exon 4
CAGAAGGGCAGAAGGACTCTGCCCAGGAAGGCTTCAATGTTGGGTTCAGGCAATCTGTAAACGTTGGCTACAAATGGGGCCTTGTTCGTGGGGTTGGCAGgtgcatttcc-tctatccttccaataatagatgtcttgtattatcattctattctagtgtttccttggattttaattttccatctgtcatcttttcaagcag
| ||||| |||||||||  |||||| || |||||||||||||||||  ||||||||||  | |||||||| || ||||| |||||||||||| ||  |||||  |      | | || ||||||   ||| |  ||||||    ||   | || |||  ||    |  ||||   |||||  | | |  || ||  || |||
CTGAAGGACAGAAGGACATTGCCCAAGAGGGCTTCAATGTTGGGTTTGGGCAATCTGTGCATGTTGGCTATAAGTGGGGACTTGTTCGTGGGATTACCAGgtaaaaaaggatatgtcattccaagtgtagtt--cttgtaca--cagcttcttgtagcattctaattaattt-ggttttctgtttattgtcctta-aaacag

upper sequence: GRMZM2G101053_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os10g42970.2 (Oryza sativa), 5'ss of exon 3
CAGAAGGGCAGAAGGACTCTGCCCAGGAAGGCTTCAATGTTGGGTTCAGGCAATCTGTAAACGTTGGCTACAAATGGGGCCTTGTTCGTGGGGTTGGCAGgtgcattt---cctctatccttccaataatagatgtcttgtattatcattctattctagtgtttccttggattttaattttccatctgtcatcttttcaagcag
||||||| |||||||||   ||||| || || ||||||||||||||  ||||||||||  | |||||||| || ||||| |||||||||||| ||  |||||  |  |     | |  | ||||||  |||| |  ||||||    ||  |  || |||  |     | |||| |  |||||  | | |  || ||  || |||
CAGAAGGACAGAAGGACATCGCCCAAGAGGGGTTCAATGTTGGGTTTGGGCAATCTGTGCATGTTGGCTATAAGTGGGGTCTTGTTCGTGGGATTACCAGgttaaaatggatatttgccattccaagtatagtt--cttgtacg--cagccgcttgtagcatccttattgattctg-ttttctgtttattgtcctta-aaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60346950|gb|DN213923.1|DN213923
EST:     CAATCTGTAAACGTTGGCTACAAATGGGGCCTTGTTCGTGGGGTTGGCAG                         TGCGCTAGCTAGTCTTCCTGACAGCTTGAAAGAAAAACTGGTGCCGGATGT
genomic: CAATCTGTAAACGTTGGCTACAAATGGGGCCTTGTTCGTGGGGTTGGCAGgtgcatttcc ... tttcaagcagTGCGCTAGCTAGTCTTCCTGACAGCTTGAAAGAAAAACTGGTGCCGGATGT
EST: gi|74242636|gb|DT650550.1|DT650550
EST:     CAATCTGTAAACGTTGGCTACAAATGGGGCCTTGTTCGTGGGGTTGGCAG                         TGCGCTAGCTAGTCTTCCTGACAGCTTGAAAGAAAAACTGGTGCCGGATGT
genomic: CAATCTGTAAACGTTGGCTACAAATGGGGCCTTGTTCGTGGGGTTGGCAGgtgcatttcc ... tttcaagcagTGCGCTAGCTAGTCTTCCTGACAGCTTGAAAGAAAAACTGGTGCCGGATGT
EST: gi|89760622|gb|DY688955.1|DY688955
EST:     CAATCTGTAAACGTTGGCTACAAATGGGGCCTTGTTCGTGGGGTTGGCAG                         TGCGCTAGCTAGTCTTCCTGACAGCTTGAAAGAAAAACTGGTGCCGGATGT
genomic: CAATCTGTAAACGTTGGCTACAAATGGGGCCTTGTTCGTGGGGTTGGCAGgtgcatttcc ... tttcaagcagTGCGCTAGCTAGTCTTCCTGACAGCTTGAAAGAAAAACTGGTGCCGGATGT
EST: gi|93282479|gb|EB674743.1|EB674743
EST:     CAATCTGTAAACGTTGGCTACAAATGGGGCCTTGTTCGTGGGGTTGGCAG                         TGCGCTAGCTAGTCTTCCTGACAGCTTGAAAGAAAAACTGGTGCCGGATGT
genomic: CAATCTGTAAACGTTGGCTACAAATGGGGCCTTGTTCGTGGGGTTGGCAGgtgcatttcc ... tttcaagcagTGCGCTAGCTAGTCTTCCTGACAGCTTGAAAGAAAAACTGGTGCCGGATGT
EST: gi|60339381|gb|DN206354.1|DN206354
EST:     AATGGGGCCTTGTTCGTGGGGTTGGCAG                         TGCGCTAGCTAGTCTTCCTGACAGCTTGAAAGAAAAACTGGTGCCGGATGT
genomic: AATGGGGCCTTGTTCGTGGGGTTGGCAGgtgcatttcc ... tttcaagcagTGCGCTAGCTAGTCTTCCTGACAGCTTGAAAGAAAAACTGGTGCCGGATGT
EST: gi|71307868|gb|DR790155.1|DR790155
EST:     CAATCTGTAAACGTTGGCTACAAATGGGGCCTTGTTCGTGGGGTTGGCAG                         TGCGCTAGCTAGTCTTCCTGACAGCTTGAAAGAAAAACTGGTGCCGGATGT
genomic: CAATCTGTAAACGTTGGCTACAAATGGGGCCTTGTTCGTGGGGTTGGCAGgtgcatttcc ... tttcaagcagTGCGCTAGCTAGTCTTCCTGACAGCTTGAAAGAAAAACTGGTGCCGGATGT
EST: gi|149064879|gb|EE286550.2|EE286550
EST:     CAATCTGTAAACGTTGGCTACAAATGGGGCCTTGTTCGTGGGGTTGGCAG                         TGCGCTAGCTAGTCTTCCTGACAGCTTGAAAGAAAAACTGGTGCCGGATGT
genomic: CAATCTGTAAACGTTGGCTACAAATGGGGCCTTGTTCGTGGGGTTGGCAGgtgcatttcc ... tttcaagcagTGCGCTAGCTAGTCTTCCTGACAGCTTGAAAGAAAAACTGGTGCCGGATGT