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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACTCTCCTCTTGGATTTCCCATGGGCGTAACTAAACGGAAGTTCAAGACATATCAAGTCATACTTTTGGTTATTTCTACAATGATACTAGTTTCTGGgtaaatatcttgacaatgagatgaatgataatgacctaatcaaccactacagttcaactcttttagctaagctttattgttggcag

Basic information

species Zea mays
transcript GRMZM2G100889_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G100889_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g05430.1 (Oryza sativa), 5'ss of exon 2
AGAACTCTCCTCTTGGATTTCCCATGGGCGTAACTAAACGGAAGTTCAAGACATATCAAGTCATACTTTTGGTTATTTCTACAATGATACTAGTTTCTGGgtaaatatcttgacaatgagatgaatgataatgac--------ctaatcaaccactacagttcaactctt---ttagctaagctttattgttggcag
||||||||||||||||| ||||||||||   ||||||| | |||| ||||||||| ||| ||||||||| ||||||| ||||| | ||| |  ||||||||||||| ||||  | || ||   ||    |||||          ||  |   || |  |     |  | |   || ||||| ||| | | |||||||
AGAACTCTCCTCTTGGACTTCCCATGGGTACAACTAAAAGCAAGTACAAGACATACCAAATCATACTTTGGGTTATTGCTACATTAATATTGATTTCTGGgtaaatttcttctccatcagcaaaagagcaatgataaatatatttagccgcgcatttgaacctcatgcctgcatttgctaaacttcactcttggcag