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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCCTGCAGACTATGAGGGCCGTACAAGGTTCACTGATTGTATCCTCAAGCATCCAAATAATTCTTGGATATAGCCAGTTGTGGGCTATATGTTCTAGgtacacgttactttcccccttttccccccctgtggaatcgtaactctccctttcatttccgttgatgcaatgtcaaattatgcatcgctacccatatcca...

Basic information

species Zea mays
transcript GRMZM2G100484_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G100484_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os09g15170.1 (Oryza sativa), 5'ss of exon 5
GATTCCTGCAGACTATGAGGGCCGTACAAGGTTCACTGATTGTATCCTCAAGCATCCAAATAATTCTTGGATATAGCCAGTTGTGGGCTATATGTTCTAGgtacacgttactttcccccttttccccccctgtggaatcgtaactctccctttcatttccgttgatgcaatgtcaaattatgcatcgctacccatatcca--
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GATTTGTGCAGACAATGAGAGCAATACAAGGCTCCCTGATAGTCTCCTCGAGCATTCAGATAATTCTTGGCTATAGCCAATTGTGGGCAATTTGCTCCAGgtac-cgcagctcccgcaatatgcttgagtaggacgtacgatgcctttatctgtttctcccctaaaa-aatattcttctgccattatatgtccaaatctgtg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76283310|gb|DV022878.1|DV022878
EST:     AGCATCCAAATAATTCTTGGATATAGCCAGTTGTGGGCTATATGTTCTAG                         GTTCTTCAGCCCACTTGGGATGGTTCCCGTGGTTGCACTGGTGGGGCTTGG
genomic: AGCATCCAAATAATTCTTGGATATAGCCAGTTGTGGGCTATATGTTCTAGgtacacgtta ... catgttacagGTTCTTCAGCCCACTTGGGATGGTTCCCGTGGTTGCACTGGTGGGGCTTGG