1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAATATTCTTGGGGAGGATCTGGGTCCACTTAGCATGAAGGAGCTCGAGCAGCTGGAGGACCAAATAGAGATATCTCTGAAGCATATCAGCTCAAGAAAGgtagaacacctgactgcgtggcttacatatttcttcagtgcgctgttttggctcgcaattgacaagggctgaaatgtttgcag
species | Zea mays |
transcript | GRMZM2G099522_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCTGGAGGACCAAATAGAGATATCTCTGAAGCATATCAGCTCAAGAAAG AATCAAATGTTACTTGACCAGCTATTTGATCTCAAAAGCAAGEST: gi|32848261|gb|CD987942.1|CD987942
genomic: AGCTGGAGGACCAAATAGAGATATCTCTGAAGCATATCAGCTCAAGAAAGgtagaacacc ... atgtttgcagAATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAG
EST: AGCTGGAGGACCAAATAGAGATATCTCTGAAGCATATCAGCTCAAGAAAG AATCAAATGTTACTTGACCAGCTATTTGATCTCAAAAGCAAGEST: gi|32836291|gb|CD975969.1|CD975969
genomic: AGCTGGAGGACCAAATAGAGATATCTCTGAAGCATATCAGCTCAAGAAAGgtagaacacc ... atgtttgcagAATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAG
EST: AGCTGGAGGACCAAATAGAGATATCTCTGAAGCATATCAGCTCAAGAAAG AATCAAATGTTACTTGACCAGCTATTTGATCTCAAAAGCAAGEST: gi|32857754|gb|CD997435.1|CD997435
genomic: AGCTGGAGGACCAAATAGAGATATCTCTGAAGCATATCAGCTCAAGAAAGgtagaacacc ... atgtttgcagAATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAG
EST: AGCTGGAGGACCAAATAGAGATATCTCTGAAGCATATCAGCTCAAGAAAG AATCAAATGTTACTTGACCAGCTATTTGATCTCAAAAGCAAGEST: gi|32846341|gb|CD986022.1|CD986022
genomic: AGCTGGAGGACCAAATAGAGATATCTCTGAAGCATATCAGCTCAAGAAAGgtagaacacc ... atgtttgcagAATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAG
EST: AGCTGGAGGACCAAATAGAGATATCTCTGAAGCATATCAGCTCAAGAAAG AATCAAATGTTACTTGACCAGCTATTTGATCTCAAAAGCAAGEST: gi|32848303|gb|CD987984.1|CD987984
genomic: AGCTGGAGGACCAAATAGAGATATCTCTGAAGCATATCAGCTCAAGAAAGgtagaacacc ... atgtttgcagAATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAG
EST: AGCTGGAGGACCAAATAGAGATATCTCTGAAGCATATCAGCTCAAGAAAG AATCAAATGTTACTTGACCAGCTATTTGATCTCAAAAGCAAG
genomic: AGCTGGAGGACCAAATAGAGATATCTCTGAAGCATATCAGCTCAAGAAAGgtagaacacc ... atgtttgcagAATCAAATGCTACTTGATCAGCTCTTTGACCTCAAAAGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATATTCTTGGGGAGGATCTGGGTCCACTTAGCATGAAGGAGCTCGAGCAGCTGGAGGACCAAATAGAGATATCTCTGAAGCATATCAGCTCAAGAAAGgtagaacacctgactgcgtggcttacatatttcttcagtgcgctgttttggctcgcaattgacaagggctgaaatgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA