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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTCAGgtgggcttttgattaggtaaacattttttgttttggtcgagtatgattatttatgtgctcatctatttgtatag

Basic information

species Zea mays
transcript GRMZM2G098815_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50336738|gb|CO531864.1|CO531864
EST:     TGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTCAG                         GTCTTTTTGCCTCGGGAACAACTTGAGAAGCAATACTGCAGTACTGGTGTA
genomic: TGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTCAGgtgggctttt ... atttgtatagGTCTTTTTGCCTCGGGAACAACTTGAGAAGCAATACTGCAGTACTGGTGTA
EST: gi|71449728|gb|DR830778.1|DR830778
EST:     TGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTCAG                         GTCTTTTTGCCTCGGGAACAACTTGAGAAGCAATACTGCAGTACTGGTGTA
genomic: TGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTCAGgtgggctttt ... atttgtatagGTCTTTTTGCCTCGGGAACAACTTGAGAAGCAATACTGCAGTACTGGTGTA
EST: gi|149082609|gb|EE171808.2|EE171808
EST:     TGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTCAG                         GTCTTTTTGCCTCGGGAACAACTTGAGAAGCAATACTGCAGTACTGGTGTA
genomic: TGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTCAGgtgggctttt ... atttgtatagGTCTTTTTGCCTCGGGAACAACTTGAGAAGCAATACTGCAGTACTGGTGTA
EST: gi|89253146|gb|DY624932.1|DY624932
EST:     TGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTCAG                         GTCTTTTTGCCTCGGGAACAACTTGAGAAGCAATACTGCAGTACTGGTGTA
genomic: TGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTCAGgtgggctttt ... atttgtatagGTCTTTTTGCCTCGGGAACAACTTGAGAAGCAATACTGCAGTACTGGTGTA
EST: gi|211052434|gb|FL214545.1|FL214545
EST:     TGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTCAG                         GTCTTTTTGCCTCGGGAACAACTTGAGAAGCAATACTGCAGTACTGGTGTA
genomic: TGAATCAGTCTGCCCTTGATTACATAAATGGATCTGTTTCAGCATCTCAGgtgggctttt ... atttgtatagGTCTTTTTGCCTCGGGAACAACTTGAGAAGCAATACTGCAGTACTGGTGTA