1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGTCATTAAGGTGCGGGTCACGAGCAAAGGCAACCTGAGAACCTACAGGAATGCTCGCGGAGAAGGCTGTGTCTTCAATGTAGAGCTCACCGATGAGGATgtaagcggtctgatggcattgttctcaagtttaagtgtgtattttcatgagttgtcgcgggttcacgaactgatattattttttttttgattttgtgtatgcacag
species | Zea mays |
transcript | GRMZM2G098714_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGCTCGCGGAGAAGGCTGTGTCTTCAATGTAGAGCTCACCGATGAGGAT GGCACCCAGATCCAAGCCACCATGTTTAATGACGCTGCAAAGAAGTTCTATEST: gi|19770120|gb|BQ034841.1|BQ034841
genomic: ATGCTCGCGGAGAAGGCTGTGTCTTCAATGTAGAGCTCACCGATGAGGATgtaagcggtc ... gtatgcacagGGCACCCAGATCCAAGCCACCATGTTTAATGACGCTGCAAAGAAGTTCTAT
EST: ATGCTCGCGGAGAAGGCTGTGTCTTCAATGTAGAGCTCACCGATGAGGAT GGCACCCAGATCCAAGCCACCATGTTTAATGACGCTGCAAAGAAGTTCTATEST: gi|71438959|gb|DR820009.1|DR820009
genomic: ATGCTCGCGGAGAAGGCTGTGTCTTCAATGTAGAGCTCACCGATGAGGATgtaagcggtc ... gtatgcacagGGCACCCAGATCCAAGCCACCATGTTTAATGACGCTGCAAAGAAGTTCTAT
EST: ATGCTCGCGGAGAAGGCTGTGTCTTCAATGTAGAGCTCACCGATGAGGAT GGCACCCAGATCCAAGCCACCATGTTTAATGACGCTGCAAAGAAGTTCTAT
genomic: ATGCTCGCGGAGAAGGCTGTGTCTTCAATGTAGAGCTCACCGATGAGGATgtaagcggtc ... gtatgcacagGGCACCCAGATCCAAGCCACCATGTTTAATGACGCTGCAAAGAAGTTCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCATTAAGGTGCGGGTCACGAGCAAAGGCAACCTGAGAACCTACAGGAATGCTCGCGGAGAAGGCTGTGTCTTCAATGTAGAGCTCACCGATGAGGATgtaagcggtctgatggcattgttctcaagtttaagtgtgtattttcatgagttgtcgcgggttcacgaactgatattattttttttttgattttgtgtatgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT