1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAATGATGGGATTATCCTTCGCAATCATATCTCACGAATCCTTCAACGCCACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAGgtaatcatatcttctgacataataaaaaatttcatgctaccaatactggatgcttcttacatatgactgattcacttttcatgttttcag
species | Zea mays |
transcript | GRMZM2G098569_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAG GTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCACEST: gi|71306846|gb|DR789579.1|DR789579
genomic: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAGgtaatcatat ... atgttttcagGTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCAC
EST: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAG GTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCACEST: gi|76293423|gb|DV032991.1|DV032991
genomic: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAGgtaatcatat ... atgttttcagGTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCAC
EST: CTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAG GTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCACEST: gi|211448759|gb|FL324438.1|FL324438
genomic: CTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAGgtaatcatat ... atgttttcagGTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCAC
EST: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAG GTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCACEST: gi|148951738|gb|EC897493.2|EC897493
genomic: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAGgtaatcatat ... atgttttcagGTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCAC
EST: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAG GTTGAGTTCAAGACAGCTTCAGGGCAAATGGTGGATCTTATCACTACEST: gi|149100779|gb|EE186873.2|EE186873
genomic: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAGgtaatcatat ... atgttttcagGTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTAC
EST: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAG GTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCACEST: gi|148950117|gb|EC895653.2|EC895653
genomic: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAGgtaatcatat ... atgttttcagGTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCAC
EST: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAG GTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCACEST: gi|71310911|gb|DR791758.1|DR791758
genomic: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAGgtaatcatat ... atgttttcagGTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCAC
EST: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAG GTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCACEST: gi|211504975|gb|FL314285.1|FL314285
genomic: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAGgtaatcatat ... atgttttcagGTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCAC
EST: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAG GTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCACEST: gi|71310909|gb|DR791757.1|DR791757
genomic: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAGgtaatcatat ... atgttttcagGTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCAC
EST: AAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAG GTAGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCACEST: gi|148964886|gb|EE015748.2|EE015748
genomic: AAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAGgtaatcatat ... atgttttcagGTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCAC
EST: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAG GTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCACEST: gi|78117582|gb|DV535969.1|DV535969
genomic: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAGgtaatcatat ... atgttttcagGTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCAC
EST: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAG GTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCAC
genomic: ACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAGgtaatcatat ... atgttttcagGTTGAGTTCAAGACAGCTTCAGGGCAAATGTTGGATCTTATCACTACCCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGATGGGATTATCCTTCGCAATCATATCTCACGAATCCTTCAACGCCACTTCAAAGGAAAGCCATATTATGTTGATATCATTGACTTGTTCAACGAGgtaatcatatcttctgacataataaaaaatttcatgctaccaatactggatgcttcttacatatgactgattcacttttcatgttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA