Sequence
atgc intronic sequence ATGC exonic sequenceTGTGGTCAATGGTGCGCTTGAATATCTTGCGAAGGATCTTGGAATTGCTGAAAATGCCGTCTTACAGggtatgacatatttttacatgctcaacttactcataccttttccccgtgtttgtaaaggaacatctaacacttcgattgactgtgcagtgcaatgctttc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G098011_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g04190.2 (Oryza sativa), 5'ss of exon 4
TGTGGTCAATGGTGCGCTTGAATATCTTGCGAAGGATCTTGGAATTGCTGAAAATGCCGTCTTACAGggtatgacatatttttacatgctcaacttactcataccttttccccgtgtttgtaaaggaacatctaacacttcgattgactgtgcagtgcaatgctttc----
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AGTGGTCAACGGCGCTCTTGAATATCTTGCAAAGGACCTTGGAATTTCTGAGAATGCTGTGTTACAAGgtgggacatccatttacttggtctataaaatccatgctttatttttagtatatattc---cttctttggtctctgtaaaaggcacatctcaaattttagatca
upper sequence: GRMZM2G098011_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA13G07780.1 (Glycine max), 5'ss of exon 4
TGTGGTCAATGGTGCGCTTGAATATCTTGCGAAGGATCTTGGAATTGCTGAAAATGCCGTCTTACAGggtatgacatatttttacatgctcaacttactcataccttttccccgtgtttgtaaaggaacatctaacacttcgattgactgtgcagtgcaatgc--tttc
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GGTGGTAAATGGTGCCCTTGAATACCTTGCTAAGGATCTTGGAATCACTGAAAATACTGTTATACAAGgtacatgctttatatgtgtg-tgtgtctatttgtaaattattaaacaaattgatttattttataggcaatgaaaactgtagatataagaaaatgcagtttc
upper sequence: GRMZM2G098011_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT5G16150.1 (Arabidopsis thaliana), 5'ss of exon 4
TGTGGTCAATGGTGCGCTTGAATATCTTGCGAAGGATCTTGGAATTGCTGAAAATGCCGTCTTACAGggtatgacatatttttacatgctcaacttactcataccttttccccgtgtttgtaaaggaacatctaacacttcgattgactgtgcagtgcaatgctttc-------------------------
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GGTGGTTAATGGTGCTCTTGAATATCTTGCTAAGGATCTTGGGATCGCCGAAAATACTGTTTTGCAAGgcaag-tatatg-----atgatccacttctttac------tcctcctgtcaacggtaaaatgattcgtgttttgattagtagccaaactcataattggtattctctatgattggtgttgagcag
upper sequence: GRMZM2G098011_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 4
TGTGGTCAATGGTGCGCTTGAATATCTTGCGAAGGATCTTGGAATTGCTGAAAATGCCGTCTTACAGggta--tgacatatttttacatgctcaacttactcataccttttccccgtgtttgtaaaggaacatctaacacttcgattgactgtgcagtgcaatgctttc--
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GGTGGTGAATGGTGCTCTTGAATACCTTTCCAAGGATCTTGGAATTGCTGAAAATGCTGTTTTACAAGgcaagtgaagtaatctt-cttgattgact-atgcaaagagaatcttggacctt-tatccttttttttttttttttttttttgtgtgttttgacatgacaagtaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148930122|gb|EC872455.2|EC872455EST: TTGAATATCTTGCGAAGGATCTTGGAATTGCTGAAAATGCCGTCTTACAG TGGACATCTGCTTATTGCTCAGGATGGGTGGTTAGCACATCCCTAGCTGGT
genomic: TTGAATATCTTGCGAAGGATCTTGGAATTGCTGAAAATGCCGTCTTACAGggtatgacat ... tatgcttcagTGGACATCTGCTTATTGCTCAGGATGGGTGGTTAGCACATCCCTAGCTGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTGGTCAATGGTGCGCTTGAATATCTTGCGAAGGATCTTGGAATTGCTGAAAATGCCGTCTTACAGggtatgacatatttttacatgctcaacttactcataccttttccccgtgtttgtaaaggaacatctaacacttcgattgactgtgcagtgcaatgctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggaaca