1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGCAAAGAAACTCGAGCATTTTTTCTGCCAGACCTGTACAGCTGAAAATGGTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccacacatgatgttagtttctgcttatcattggtgtaagcttgctatctaagggggtgattggttccaagggactaaaccgtcatatcgggtgtc...
species | Zea mays |
transcript | GRMZM2G097726_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|148940632|gb|EC885443.2|EC885443
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|78180631|gb|DV550959.1|DV550959
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|67017898|gb|CO446647.1|CO446647
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|148942300|gb|EC887317.2|EC887317
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGCCAAAAAGGCGGCGAAAGTGATGGCCGTGCTGATTEST: gi|148941206|gb|EC886093.2|EC886093
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATT
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|78074294|gb|DV502728.1|DV502728
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|93282376|gb|EB674640.1|EB674640
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|4967167|gb|AI691875.1|AI691875
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CTGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|8551650|gb|BE128821.1|BE128821
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|28909803|gb|CB331108.1|CB331108
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|91872374|gb|EB402331.1|EB402331
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|32825292|gb|CD965014.1|CD965014
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAEST: gi|78082597|gb|DV511009.1|DV511009
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAA-GGCGGCGAAGGTGATGGCCGTGCTGAEST: gi|211072814|gb|FL228291.1|FL228291
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGA
EST: AAGATGGGTGAGAATTCACCTGAAAGCTACGGCGCAATCAGAAGAAAAAG CCGGGGGAGTCAAAAAGGEST: gi|78074295|gb|DV502729.1|DV502729
genomic: AAGATGGTTGAGAATTCACATGAA-GCTACAGCGCAATCAGAAGAAAA-Ggtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGG
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|76927199|gb|DV171172.1|DV171172
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAAGTGATGGCCGTGCTGATTAAATTTAEST: gi|67022285|gb|CO451034.1|CO451034
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|50336946|gb|CO532072.1|CO532072
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|91872230|gb|EB402187.1|EB402187
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|22818819|gb|BU498909.1|BU498909
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CTGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|60399583|gb|DN232394.1|DN232394
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|148951992|gb|EC897774.2|EC897774
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|9733234|gb|BE511986.1|BE511986
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CTGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|32823010|gb|CD962719.1|CD962719
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTEST: gi|60354816|gb|DN221789.1|DN221789
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCT
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTAEST: gi|60357704|gb|DN224677.1|DN224677
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
EST: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAG CCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
genomic: GTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccaca ... atctcttcagCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAAAGAAACTCGAGCATTTTTTCTGCCAGACCTGTACAGCTGAAAATGGTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCAGAAGAAAAGgtaagccacacatgatgttagtttctgcttatcattggtgtaagcttgctatctaagggggtgattggttccaagggactaaaccgtcatatcgggtgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA