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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGAGAGTACCAAGGTGCATACAAGgtttgtaaaagttataaggattaatgtgtctgcttttatctgtcggtaatgtaaaactgaaatcttaaatcctaccatttttgtaatattcatcggtgtcctgttgcag

Basic information

species Zea mays
transcript GRMZM2G097226_T02
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78122124|gb|DV540508.1|DV540508
EST:     GTTGGAGAGTACCAAGGTGCATACAAG                         ATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG
genomic: GTTGGAGAGTACCAAGGTGCATACAAGgtttgtaaaa ... cctgttgcagATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG
EST: gi|211069303|gb|FL193602.1|FL193602
EST:     GTTGGAGAGTACCAAGGTGCATACAAG                         ATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG
genomic: GTTGGAGAGTACCAAGGTGCATACAAGgtttgtaaaa ... cctgttgcagATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG
EST: gi|32940983|gb|CF045802.1|CF045802
EST:     TACCAAGGTGCATACAAG                         ATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG
genomic: TACCAAGGTGCATACAAGgtttgtaaaa ... cctgttgcagATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG
EST: gi|32799904|gb|CD952140.1|CD952140
EST:     GTTGGAGAGTACCAAGGCGCATACAAG                         ATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG
genomic: GTTGGAGAGTACCAAGGTGCATACAAGgtttgtaaaa ... cctgttgcagATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG
EST: gi|91057168|gb|EB167586.1|EB167586
EST:     GTTGGAGAGTACCAAGGTGCATACAAG                         ATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG
genomic: GTTGGAGAGTACCAAGGTGCATACAAGgtttgtaaaa ... cctgttgcagATTTCTAAGGGCTTGCTTGATAGGTATGGTCCTGATAGGGTTCTTGACACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGGAGAGTACCAAGGTGCATACAAGgtttgtaaaagttataaggattaatgtgtctgcttttatctgtcggtaatgtaaaactgaaatcttaaatcctaccatttttgtaatattcatcggtgtcctgttgcag

 TTGGAG
- TGGAGA