1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTATGATTTGAACAGCTCTGAGGAGGACAGGAATACCATCAAGATAAAGAAAAGgtatcactttcataactccgttctttgtccatcaacttttgctttcttgatttagttgtgtcatgtggcggcgcacgtacaggtgccgccgtgacgtgcg...
species | Zea mays |
transcript | GRMZM2G096622_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATTTGAACAGCTCTGAGGAGGACAGGAATACCATCAAGATAAAGAAAAG GAAAGAATATGAAAAATTGAGGCGACAGTGCCACCATGTTCTGCATTGCAAEST: gi|76292694|gb|DV032262.1|DV032262
genomic: GATTTGAACAGCTCTGAGGAGGACAGGAATACCATCAAGATAAAGAAAAGgtatcacttt ... tctggtgcagGAAAGAATATGAAAAATTGAGGCGACAGTGCCACCATGTTCTGCATTGCAA
EST: GATTTGAACAGCTCTGAGGAGGACAGGAATACCATCAAGATAAAGAAAAG GAAAGAATATGAAAAATTGAGGCGACAGTGCCACCATGTTCTGCATTGCAAEST: gi|71443062|gb|DR824112.1|DR824112
genomic: GATTTGAACAGCTCTGAGGAGGACAGGAATACCATCAAGATAAAGAAAAGgtatcacttt ... tctggtgcagGAAAGAATATGAAAAATTGAGGCGACAGTGCCACCATGTTCTGCATTGCAA
EST: GATTTGAACAGCTCTGAGGAGGACAGGAATACCATCAAGATAAAGAAAAG GAAAGAATATGAAAAATTGAGGCGACAGTGCCACCATGTTCTGCATTGCAAEST: gi|91876915|gb|EB406872.1|EB406872
genomic: GATTTGAACAGCTCTGAGGAGGACAGGAATACCATCAAGATAAAGAAAAGgtatcacttt ... tctggtgcagGAAAGAATATGAAAAATTGAGGCGACAGTGCCACCATGTTCTGCATTGCAA
EST: GATTTGAACAGCTCTGAGGAGGACAGGAATACCATCAAGATAAAGAAAAG GAAAGAATATGAAAAATTGAGGCGACAGTGCCCCCATGTTCTGCATTGCAAEST: gi|91051556|gb|EB161974.1|EB161974
genomic: GATTTGAACAGCTCTGAGGAGGACAGGAATACCATCAAGATAAAGAAAAGgtatcacttt ... tctggtgcagGAAAGAATATGAAAAATTGAGGCGACAGTGCCACCATGTTCTGCATTGCAA
EST: GATTTGAACAGCTCTGAGGAGGACAGGAATACCATCAAGATAAAGAAAAG GAAAGAATATGAAAAATTGAGGCGACAGTGCCACCCTGTTCTGCATTGCAAEST: gi|211251962|gb|FL399222.1|FL399222
genomic: GATTTGAACAGCTCTGAGGAGGACAGGAATACCATCAAGATAAAGAAAAGgtatcacttt ... tctggtgcagGAAAGAATATGAAAAATTGAGGCGACAGTGCCACCATGTTCTGCATTGCAA
EST: CCATCAAGATAAAGAAAAG GAAAGAATATGAAAAATTGAGGCGACAGTGCCACCATGTTCTGCATTGCAA
genomic: CCATCAAGATAAAGAAAAGgtatcacttt ... tctggtgcagGAAAGAATATGAAAAATTGAGGCGACAGTGCCACCATGTTCTGCATTGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATGATTTGAACAGCTCTGAGGAGGACAGGAATACCATCAAGATAAAGAAAAGgtatcactttcataactccgttctttgtccatcaacttttgctttcttgatttagttgtgtcatgtggcggcgcacgtacaggtgccgccgtgacgtgcg
- - - - - - CAGCTC
- - - - - - - - - GAGGAG
- - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAA