1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGTGAGACCAATGAAACAAATTTAGATATTGGCATACATGCTGTTCTTCTGCCAAAAGATGCAGGCTCTTCTTTACAAAGGTCTCTCTCTAGTGGTGAAGgtaaattgtttgtcttcagttccatgctttgtgtcatctctgtgaatacatgggtgcctatgtttgtttaacttttcatatttttggtaacttgagtattggaaacttattttagtgcaaggtagctaacaggctaagttttcctttttttgtcag
species | Zea mays |
transcript | GRMZM2G096343_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCCAAAAGATGCAGGCTCTTCTTTACAAAGGTCTCTCTCTAGTGGTGAAG TCTTAGTGGAGCTGTACTCTCCAGATCGTCCTCTGGTTGATACTGCAGAGGEST: gi|89758526|gb|DY687677.1|DY687677
genomic: GCCAAAAGATGCAGGCTCTTCTTTACAAAGGTCTCTCTCTAGTGGTGAAGgtaaattgtt ... tttttgtcagTCTTAGTGGAGCTGTACTCTCCAGATCGTCCTCTGGTTGATACTGCAGAGG
EST: GCCAAAAGATGCAGGCTCTTCTTTACAAAGGTCTCTCTCTAGTGGTGAAG TCTTAGTGGAGCTGTACTCTCCAGATCGTCCTCTGGTTGATACTGCAGAGGEST: gi|211335511|gb|FL455439.1|FL455439
genomic: GCCAAAAGATGCAGGCTCTTCTTTACAAAGGTCTCTCTCTAGTGGTGAAGgtaaattgtt ... tttttgtcagTCTTAGTGGAGCTGTACTCTCCAGATCGTCCTCTGGTTGATACTGCAGAGG
EST: GCCAAAAGATGCAGGCTCTTCTTTACAAAGGTCTCTCTCTAGTGGTGAAG TCTTAGTGGAGCTGTACTCTCCAGATCGTCCTCTGGTTGATACTGCAGAGGEST: gi|211297692|gb|FL447045.1|FL447045
genomic: GCCAAAAGATGCAGGCTCTTCTTTACAAAGGTCTCTCTCTAGTGGTGAAGgtaaattgtt ... tttttgtcagTCTTAGTGGAGCTGTACTCTCCAGATCGTCCTCTGGTTGATACTGCAGAGG
EST: GCCAAAAGATGCAGGCTCTTCTTTACAAAGGTCTCTCTCTAGTGGTGAAG TCTTAGTGGAGCTGTACTCTCCAGATCGTCCTCTGGTTGATACTGCAGAGGEST: gi|148956514|gb|EC902353.2|EC902353
genomic: GCCAAAAGATGCAGGCTCTTCTTTACAAAGGTCTCTCTCTAGTGGTGAAGgtaaattgtt ... tttttgtcagTCTTAGTGGAGCTGTACTCTCCAGATCGTCCTCTGGTTGATACTGCAGAGG
EST: GCCAAAAGATGCAGGCTCTTCTTTACAAAGGTCTCTCTCTAGTGGTGAAG TCTTAGTGGAGCTGTACTCTCCAGATCGTCCTCTGGTTGATACTGCAGAGGEST: gi|149081128|gb|EE170234.2|EE170234
genomic: GCCAAAAGATGCAGGCTCTTCTTTACAAAGGTCTCTCTCTAGTGGTGAAGgtaaattgtt ... tttttgtcagTCTTAGTGGAGCTGTACTCTCCAGATCGTCCTCTGGTTGATACTGCAGAGG
EST: GCCAAAAGATGCAGGCTCTTCTTTACAAAGGTCTCTCTCTAGTGGTGAAG TCTTAGTGGAGCTGTACTCTCCAGATCGTCCTCTGGTTGATACTGCAGAGGEST: gi|71422117|gb|DR805619.1|DR805619
genomic: GCCAAAAGATGCAGGCTCTTCTTTACAAAGGTCTCTCTCTAGTGGTGAAGgtaaattgtt ... tttttgtcagTCTTAGTGGAGCTGTACTCTCCAGATCGTCCTCTGGTTGATACTGCAGAGG
EST: GCCAAAAGATGCAGGCTCTTCTTTACAAAGGTCTCTCTCTAGTGGTGAAG TCTTAGTGGAGCTGTACTCTCCAGATCGTCCTCTGGTTGATACTGCAGAGG
genomic: GCCAAAAGATGCAGGCTCTTCTTTACAAAGGTCTCTCTCTAGTGGTGAAGgtaaattgtt ... tttttgtcagTCTTAGTGGAGCTGTACTCTCCAGATCGTCCTCTGGTTGATACTGCAGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGAGACCAATGAAACAAATTTAGATATTGGCATACATGCTGTTCTTCTGCCAAAAGATGCAGGCTCTTCTTTACAAAGGTCTCTCTCTAGTGGTGAAGgtaaattgtttgtcttcagttccatgctttgtgtcatctctgtgaatacatgggtgcctatgtttgtttaacttttcatatttttggtaacttgagtattggaaacttattttagtgcaaggtagctaacaggctaagttttcctttttttgtcag
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