1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaatttttggatttgtatttgccatcgttgtttagtggttctgttgactcctgatctggtgcattttggatggtcag
species | Zea mays |
transcript | GRMZM2G095969_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCTEST: gi|88757501|gb|DY541642.1|DY541642
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCTEST: gi|71774366|gb|DR972244.1|DR972244
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCTEST: gi|74242558|gb|DT650472.1|DT650472
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCTEST: gi|94477631|gb|EB706589.1|EB706589
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCTEST: gi|71325561|gb|DR799471.1|DR799471
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCTEST: gi|76936926|gb|DV174965.1|DV174965
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCTEST: gi|211484453|gb|FL145754.1|FL145754
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTGCTGGCTEST: gi|76021692|gb|DT948862.1|DT948862
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCTEST: gi|78108903|gb|DV527320.1|DV527320
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGG GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCTEST: gi|14548489|gb|BI096833.1|BI096833
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCT
EST: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACGAGATGCGGG GAGTTCGAGGAGAGTGGAGACCCCGAGGGTCATTTTCAGGCACTG
genomic: GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaa ... ggatggtcagGAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGACTGTTCTGCACTGTGGGAGTGCACCCAACAAGATGCGGGgtagctggaatttttggatttgtatttgccatcgttgtttagtggttctgttgactcctgatctggtgcattttggatggtcag
- - - - - - - - - - - - - - - - - AAGATG