1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGTTGGAATCCATGACTTCACGTCTTTTGCTAATGCTGCACATAATGACGGTGAGCGCAGGCCCACAAAGAAGATAACACGTTTTGATGTTACTGAAATGgtaattgatttccaaaccaaaatgtttttattacttcttttttcacactgggtgtgctgttcagtattggttttatacttttatctttacacattggccagcttccatttggtgttcgttgaggttgacatggtatttcttttttgttcgtatactctacag
species | Zea mays |
transcript | GRMZM2G095782_T04 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGGAGCGCAGGCCCCCAAAGAAGATAACACGTTTTGAGGTTACTGAAATG GGGTGCTGTCTTACAGCTTCGAGGEST: gi|211365431|gb|FL362340.1|FL362340
genomic: GTGAGCGCAGGCCCACAAAGAAGATAACACGTTTTGATGTTACTGAAATGgtaattgatt ... tactctacagGG-TGCTGTCTTACAGCT-CGAGG
EST: GTGAGCGCAGGCCCACAAAGAAGATAACACGTTTTGATGTTACTGAAATG GGTGCTGTCTTACAGCTCGAGGTTGAAGGCACCNGGTTTTCTGTACAGACAEST: gi|78091689|gb|DV520063.1|DV520063
genomic: GTGAGCGCAGGCCCACAAAGAAGATAACACGTTTTGATGTTACTGAAATGgtaattgatt ... tactctacagGGTGCTGTCTTACAGCTCGAGGTTGAAGGCACC-GGTTTTCTGTACAGACA
EST: GTGAGCGCAGGCCCACAAAGAAGATAACACGTTTTGATGTTACTGAAATG GGGGCTGTCTTACAGCTCGAGGTTGAAGGCACCGGTTTTCTGTACAGACAAEST: gi|101390144|gb|EB817004.1|EB817004
genomic: GTGAGCGCAGGCCCACAAAGAAGATAACACGTTTTGATGTTACTGAAATGgtaattgatt ... tactctacagGGTGCTGTCTTACAGCTCGAGGTTGAAGGCACCGGTTTTCTGTACAGACAA
EST: GTGAGCGCAGGCCCACAAAGAAGATAACACGTTTTGATGTTACTGAAATG GGTGCTGTCTTACAGCTCGAGGTTGAAGGCACCGGTTTTCTGTACAGACAAEST: gi|32839976|gb|CD979657.1|CD979657
genomic: GTGAGCGCAGGCCCACAAAGAAGATAACACGTTTTGATGTTACTGAAATGgtaattgatt ... tactctacagGGTGCTGTCTTACAGCTCGAGGTTGAAGGCACCGGTTTTCTGTACAGACAA
EST: GTGAGCGCAGGCCCACAAAGAAGATAACACGTTTTGATGTTACTGAAATG GGCGCTGTCTTACAGCTCGAGGTTGAAGGCACCGGTTTTCTGTEST: gi|71317498|gb|DR795465.1|DR795465
genomic: GTGAGCGCAGGCCCACAAAGAAGATAACACGTTTTGATGTTACTGAAATGgtaattgatt ... tactctacagGGTGCTGTCTTACAGCTCGAGGTTGAAGGCACCGGTTTTCTGT
EST: GTGAGCGCAGGCCCACAAAGAAGATAACACGTTTTGATGTTACTGAAATG GGTGCTGTCTTACAGCTCGAGGTTGAAGGCACCGGTTTTCTGTACAGACAAEST: gi|76013636|gb|DT940806.1|DT940806
genomic: GTGAGCGCAGGCCCACAAAGAAGATAACACGTTTTGATGTTACTGAAATGgtaattgatt ... tactctacagGGTGCTGTCTTACAGCTCGAGGTTGAAGGCACCGGTTTTCTGTACAGACAA
EST: GTGAGCGCAGGCCCACAAAGAAGATAACACGTTTTGATGTTACTGAAATG GGTGCTGTCTTACAGCTCGAGGTTGAAAGGCAC-GGTTTTCTGTACEST: gi|32839935|gb|CD979616.1|CD979616
genomic: GTGAGCGCAGGCCCACAAAGAAGATAACACGTTTTGATGTTACTGAAATGgtaattgatt ... tactctacagGGTGCTGTCTTACAGCTCGAGGTTGAA-GGCACCGGTTTTCTGTAC
EST: GTGAGCGCAGGCCCACAAAGAAGATAACACGTTTTGATGTTACTGAAATG GGTGCTGTCTTACAGCTCGAGGTTGAAGGCACCGGTTTTCTGTEST: gi|76013635|gb|DT940805.1|DT940805
genomic: GTGAGCGCAGGCCCACAAAGAAGATAACACGTTTTGATGTTACTGAAATGgtaattgatt ... tactctacagGGTGCTGTCTTACAGCTCGAGGTTGAAGGCACCGGTTTTCTGT
EST: GTGAGCGCAGGCCCACAAAGAAGATAACACGTTTTGATGTTACTGAAATG GGTGCTGTCTTACAGCTCGAGGTTGAAGGCACCGGTTTTCTGTACAGACAA
genomic: GTGAGCGCAGGCCCACAAAGAAGATAACACGTTTTGATGTTACTGAAATGgtaattgatt ... tactctacagGGTGCTGTCTTACAGCTCGAGGTTGAAGGCACCGGTTTTCTGTACAGACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGGAATCCATGACTTCACGTCTTTTGCTAATGCTGCACATAATGACGGTGAGCGCAGGCCCACAAAGAAGATAACACGTTTTGATGTTACTGAAATGgtaattgatttccaaaccaaaatgtttttattacttcttttttcacactgggtgtgctgttcagtattggttttatacttttatctttacacattggccagcttccatttggtgttcgttgaggttgacatggtatttcttttttgttcgtatactctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG