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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACTCATTAGACCACATCCTGCCATTTGGAGGCTTGTTCATGGGATGACAGTTGTTTACCTTGTCGCCCTCACTTTCTTGCTTTTTCAGgtgaatgcagtttttcattagctttgttcaataagtttttaaaagattctttcactgcatgaattgtcaagtgttgcattctattttgttttatatctat...

Basic information

species Zea mays
transcript GRMZM2G095757_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 4
TGGACTCATTAGACCACATCCTGCCATTTGGAGGCTTGTTCATGGGATGACAGTTGTTTACCTTGTCGCCCTCACTTTCTTGCTTTTTCAGgtgaatgcagtttttc---attagctttgttcaataagtttttaaaagattctttcactgcatgaattgtcaag-tgttgcattctattttgttttatatctat
|| ||| |||||||||||||||||||||||| |||| || || |||||| |||||||||||||||| || || ||||| |||||||| ||||| | | ||| ||||    ||||   ||| |||| |  ||||||   |||  ||    | |||| ||| | |||   ||||||||| ||   |||| |||    
TGTACTTATTAGACCACATCCTGCCATTTGGCGGCTGGTCCACGGGATGGCAGTTGTTTACCTTGTTGCTCTAACTTTTTTGCTTTTCCAGgtaagtacagctttttcttattactcttgctcaacacatttttattggatcattgatattcatggattattaaggcattgcattcttttactttttttat----

upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 5
TGGACTCATTAGACCACATCCTGCCATTTGGAGGCTTGTTCATGGGATGACAGTTGTTTACCTTGTCGCCCTCACTTTCTTGCTTTTTCAGgtgaatg-cagtttttca--ttagctttgttcaataagtt---tttaaaagattctttcactgcatgaattgtcaagtgttgcattctattttgttttatatctat
 |  || ||||| ||||||||||| |||||| |  | |||||||| ||| | |||||||||||||| |||||||| || ||||||||||||||   |  |  | | |||  ||| || |  |   |  ||    |||||    || | |||  || | |||| |  | | ||| | | ||||||||   | |     
GGTTCTTATTAGGCCACATCCTGCAATTTGGCGCTTGGTTCATGGAATGGCTGTTGTTTACCTTGTTGCCCTCACATTTTTGCTTTTTCAGgttggtctccatgtctcaatttaactattctttttgtgtaaagtttaagtagttttgtcaa-gcgtaaattttacatttttgtagtgtattttgtagcaga-----

upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 7
TGGACTCATTAGACCACATCCTGCCATTTGGAGGCTTGTTCATGGGATGACAGTTGTTTACCTTGTCGCCCTCACTTTCTTGCTTTTTCAGgt-gaatgcagtttttcattagctttgttcaataagttt-----ttaaaagattctttcactgcatgaattgtcaagtgttgcattctatttt-gttttatatctat
 |  || ||||| ||||||||||| |||||| |  | |||||||| ||| | ||||| ||||| || |||||||| || |||||||||||||| |  | |  | | ||| |   | | |||  |  || |     ||||   ||| | |||  || | || | |  | | ||| | | |||||| | | ||       
GGTTCTTATTAGGCCACATCCTGCAATTTGGCGCTTGGTTCATGGCATGGCTGTTGTATACCTAGTTGCCCTCACATTTTTGCTTTTTCAGgttggtttccatgtctcaatttatctattctttgtgtgtaaagtttaagtaattttgtcaa-gcttaaactttgcatttttgtagtgtatttttgctctag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211278210|gb|FL461478.1|FL461478
EST:     ATGGGATGACAGTTGTTTACCTTGTCGCCCTCACTTTCTTGCTTTTTCAG                         ACTCGTGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGT
genomic: ATGGGATGACAGTTGTTTACCTTGTCGCCCTCACTTTCTTGCTTTTTCAGgtgaatgcag ... tgttttgcagACTCGTGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGT