1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGAAGAGTTTGTTATGACCAAAGACGAGTTTTCGGGTGCTGATATTAAGGCAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtgaacttttatcttttgctaaaaatagattcagaattttctgggtgaatataactgttcaaataactcaactattttgctattggataggaat...
species | Zea mays |
transcript | GRMZM2G095593_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|20300162|gb|BQ163105.1|BQ163105
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCEST: gi|6095605|gb|AW120272.1|AW120272
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGC
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|18963161|gb|BM660274.1|BM660274
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCEST: gi|32935651|gb|CF040463.1|CF040463
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGC
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTEST: gi|5296251|gb|AI782931.1|AI782931
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGT
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGEST: gi|33095909|gb|CF055903.1|CF055903
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGGCCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|213170809|gb|FM191861.1|FM191861
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|71446953|gb|DR828003.1|DR828003
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|113704000|gb|EE681504.1|EE681504
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGATAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|5762107|gb|AI967155.1|AI967155
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|20507124|gb|BQ279496.1|BQ279496
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|32906982|gb|CF011795.1|CF011795
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTATTATAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|116824999|gb|EC868683.1|EC868683
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCACAGGAGAAGGTGATGTACAAGAAGEST: gi|22714021|gb|BU197442.1|BU197442
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|5762170|gb|AI967218.1|AI967218
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|149008286|gb|EE040435.2|EE040435
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|32930331|gb|CF035143.1|CF035143
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|211247443|gb|FL282637.1|FL282637
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|8318691|gb|BE025256.1|BE025256
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|213174434|gb|FM191853.1|FM191853
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: GCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|21987744|gb|BQ779272.1|BQ779272
genomic: GCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|8576996|gb|BE129633.1|BE129633
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGEST: gi|5650403|gb|AI920763.1|AI920763
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|213169731|gb|FM183251.1|FM183251
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGNTNTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|18661880|gb|BM501630.1|BM501630
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCEST: gi|5847225|gb|AW000304.1|AW000304
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGC
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|213180007|gb|FM195909.1|FM195909
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|5901265|gb|AW042365.1|AW042365
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|211247444|gb|FL282638.1|FL282638
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|20513035|gb|BQ280221.1|BQ280221
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|32936539|gb|CF041358.1|CF041358
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAAGTGATGTTCAAGAAGEST: gi|18654858|gb|BM499663.1|BM499663
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCEST: gi|32912987|gb|CF017799.1|CF017799
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGC
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|5325130|gb|AI783321.1|AI783321
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|211247440|gb|FL282634.1|FL282634
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|56382674|gb|CV985343.1|CV985343
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|5846790|gb|AI999873.1|AI999873
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|211247441|gb|FL282635.1|FL282635
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTTGACCCATGCAGATTTCAAGAAGGCCAAGGAGAAGGTGATGTTCAAGAAEST: gi|22472561|gb|BU037041.1|BU037041
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGT-GACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAA
EST: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAGEST: gi|113567205|gb|DW740920.1|DW740920
genomic: CAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
EST: CACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAG GTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
genomic: CACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtga ... gtacacccagGTGACCCATGCAGATTTCAAGAAGGCAAAGGAGAAGGTGATGTACAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGAGTTTGTTATGACCAAAGACGAGTTTTCGGGTGCTGATATTAAGGCAATCTGCACAGAGGCTGGATTGCTTGCCTTAAGAGAACGCAGAATGAAGgtagacgtgaacttttatcttttgctaaaaatagattcagaattttctgggtgaatataactgttcaaataactcaactattttgctattggataggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaataac