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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAGgtaaggccgttagggcccgaacaggtttttggaaacgccatgtgcatgagttcataccaatgttagtaaataagatatgaaccaaacataacattagggt...

Basic information

species Zea mays
transcript GRMZM2G095348_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095348_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 5'ss of exon 4
GATCCTGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAGgtaaggccgttagggcccgaacaggtttttggaaacgccat-gtgcatgagttcataccaa-tgttagtaaataagatatgaaccaaacataacattagggt
||||||||||||||| ||||| ||||| || ||||||||||| |||||  | ||||||||     |||   |     |||||  | |   | ||||   ||| || |      ||| |  |  | ||  | |||||||  |  || |||  ||    
GATCCTGTCGAGTCTTTACTCCGGGAGCGTGTGCATCTGGGACTATCAGTCGCAGgtaagagttctagttgcattttaggttcattgtttccccattaagcaagactaagactcaactacttttgaagtaaatatgaat-attcaaaactgtactc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18655015|gb|BM499820.1|BM499820
EST:     TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAG                         GCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
genomic: TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAGgtaaggccgt ... accttttcagGCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
EST: gi|78122343|gb|DV540727.1|DV540727
EST:     TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAG                         GCAATGGTGAAATCATTTGAAGTTTCAAAACTGCCAG
genomic: TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAGgtaaggccgt ... accttttcagGCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
EST: gi|18654986|gb|BM499791.1|BM499791
EST:     TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAG                         GCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
genomic: TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAGgtaaggccgt ... accttttcagGCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
EST: gi|22489991|gb|BU049914.1|BU049914
EST:     TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAG                         GCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
genomic: TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAGgtaaggccgt ... accttttcagGCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
EST: gi|18655044|gb|BM499849.1|BM499849
EST:     TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAG                         GCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
genomic: TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAGgtaaggccgt ... accttttcagGCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
EST: gi|18655016|gb|BM499821.1|BM499821
EST:     TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAG                         GCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
genomic: TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAGgtaaggccgt ... accttttcagGCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
EST: gi|18662028|gb|BM501705.1|BM501705
EST:     TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAG                         GCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
genomic: TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAGgtaaggccgt ... accttttcagGCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
EST: gi|32930849|gb|CF035661.1|CF035661
EST:     ACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAG                         GCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
genomic: ACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAGgtaaggccgt ... accttttcagGCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
EST: gi|89106409|gb|DY576626.1|DY576626
EST:     TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAG                         GCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
genomic: TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAGgtaaggccgt ... accttttcagGCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
EST: gi|18655043|gb|BM499848.1|BM499848
EST:     TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAG                         GCAATGGTTGAAATCATTTGAAGTTTCAGAACTGCCAG
genomic: TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAGgtaaggccgt ... accttttcagGCAATGGT-GAAATCATTTGAAGTTTCAGAACTGCCAG
EST: gi|18654807|gb|BM499612.1|BM499612
EST:     TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAG                         GCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
genomic: TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAGgtaaggccgt ... accttttcagGCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
EST: gi|22489999|gb|BU049922.1|BU049922
EST:     TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAG                         GCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
genomic: TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAGgtaaggccgt ... accttttcagGCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
EST: gi|18649626|gb|BM498445.1|BM498445
EST:     TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAG                         GCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
genomic: TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAGgtaaggccgt ... accttttcagGCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
EST: gi|32933566|gb|CF038378.1|CF038378
EST:     ACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAG                         GCAATGGTGAAATCGTTTGAAGTTTCAGAACTGCCAG
genomic: ACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAGgtaaggccgt ... accttttcagGCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
EST: gi|18661996|gb|BM501688.1|BM501688
EST:     TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAG                         GCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG
genomic: TGTCGAGTCTGTACTCGGGGAGTGTCTGCATCTGGGATTATCAAGCACAGgtaaggccgt ... accttttcagGCAATGGTGAAATCATTTGAAGTTTCAGAACTGCCAG