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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTAATGAGTGGCACTGTGGCTTTTGCAAGAAAGCTTTCCGAGCAGAGAAGTTCATTGATCAGCATTTTGAAAATCGCCACAAGAATCTTGTGGATAATgtatgcttacataacagtgattatatttctttagtatatgcttacttatcatgaatttgatattatttgtattgtaatcacaagctataccttctttcat...

Basic information

species Zea mays
transcript GRMZM2G095323_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095323_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g13130.4 (Oryza sativa), 5'ss of exon 5
TATTAATGAGTGGCACTGTGGCTTTTGCAAGAAAGCTTTCCGAGCAGAGAAGTTCATTGATCAGCATTTTGAAAATCGCCACAAGAATCTTGTGGATAATgtatgcttacataacagtgattatatttctttagtatatgcttacttatcatgaatttgatattatttgtat-tgtaatcacaagctataccttctttcat--
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TATAAATGAATGGCGCTGTGGTTTCTGCAAGAAAGCCTTCCGAGCAGAGAAGTTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAATgtatgatt-cttaccgatttgcatgagactttcaatcatccgttcc-ataaatcacttg-tactagtttcatatctgctttctttctttgatagtattggtgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91878948|gb|EB408905.1|EB408905
EST:     AGTTCATTGATCAGCATTTTGAAAATCGCCCCAAGAATCTTGTGGATAAT                         AGTGAAGGAAGATG
genomic: AGTTCATTGATCAGCATTTTGAAAATCGCCACAAGAATCTTGTGGATAATgtatgcttac ... attttcttagAGTGAAGGAAGATG
EST: gi|78125182|gb|DV543566.1|DV543566
EST:     AGTTCATTGATCAGCATTTTGAATATCGCCACAAGAATCTTGTGGATAAT                         AGTGAAGGAAGATGCGTGGCAGATCTATGCGGCGCACTACATTGTGATCTG
genomic: AGTTCATTGATCAGCATTTTGAAAATCGCCACAAGAATCTTGTGGATAATgtatgcttac ... attttcttagAGTGAAGGAAGATGCATGGCAGATCTATGCGGCGCACTACATTGTGATCTG
EST: gi|78115630|gb|DV534018.1|DV534018
EST:     AGTTCATTGATCAGCATTTTGAAAATCGCCACAAGAATCTTGTGGATAAT                         AGTGAAGGAAGATGCATGGCAGATCTATGCGGCGCACTACATTGTGATCTG
genomic: AGTTCATTGATCAGCATTTTGAAAATCGCCACAAGAATCTTGTGGATAATgtatgcttac ... attttcttagAGTGAAGGAAGATGCATGGCAGATCTATGCGGCGCACTACATTGTGATCTG
EST: gi|88755486|gb|DY539627.1|DY539627
EST:     AGTTCATTGATCAGCATTTTGAAAATCGCCACAAGAATCTTGTGGATAAT                         AGTGAAGGAAGATGCATGGCAGATCTATGCGGCGCACTACATTGTGATCTG
genomic: AGTTCATTGATCAGCATTTTGAAAATCGCCACAAGAATCTTGTGGATAATgtatgcttac ... attttcttagAGTGAAGGAAGATGCATGGCAGATCTATGCGGCGCACTACATTGTGATCTG