1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCTTCTCCAGGTCCAACATCAACTGCACCATCGAGGAGAGCCTTGCTCGGTACCGCGGCGTCACAGCGGCTGCCAAGAAACACGGGCTAAGCATCCGGGGgtaagtgagtcgatcgatttttctttctttctttcccgcctcttcaagtccgtgtgatgtggtctgaattcctctgttggtctctcag
species | Zea mays |
transcript | GRMZM2G095141_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TACCGCGGCGTCACAGCGGCTGCCAAGAAACACGGGCTAAGCATCCGGGG GTACGTGTCATGTGTGATTGCTTGCCCCGTTGGAGGCGCAACCGATCCGGCEST: gi|211013342|gb|FL464501.1|FL464501
genomic: TACCGCGGCGTCACAGCGGCTGCCAAGAAACACGGGCTAAGCATCCGGGGgtaagtgagt ... ggtctctcagGTACGTGTCATGTGTGATTGCTTGCCCCGTTGGAGGCGCAACCGATCCGGC
EST: TACCGCGGGGTCAAAGCGGCTGCCAAGAAACACGGGCTAAGCATCCGGGG GTAGGTGTCATGTGTGATTGCTTGCCCCGTGGGGGGCGCAACCGATCCGGCEST: gi|211139185|gb|FL464627.1|FL464627
genomic: TACCGCGGCGTCACAGCGGCTGCCAAGAAACACGGGCTAAGCATCCGGGGgtaagtgagt ... ggtctctcagGTACGTGTCATGTGTGATTGCTTGCCCCGTTGGAGGCGCAACCGATCCGGC
EST: TACCGCGGCGTCACAGCGGCTGCCAAGAAACACGGGCTAAGCATCCGGGG GTACGTGTCATGTGTGATTGCTTGCCCCGTTGGAGGCGCAACCGATCCGGCEST: gi|148950048|gb|EC895580.2|EC895580
genomic: TACCGCGGCGTCACAGCGGCTGCCAAGAAACACGGGCTAAGCATCCGGGGgtaagtgagt ... ggtctctcagGTACGTGTCATGTGTGATTGCTTGCCCCGTTGGAGGCGCAACCGATCCGGC
EST: TCACAGCGGCTGCCAAGAAACACGGGCTAAGCATCCGGGG GTACGTGTCATGTGTGATTGC-TGCCCCCGTTGGAGGCGCAACCGATCCGGEST: gi|211081279|gb|FL464186.1|FL464186
genomic: TCACAGCGGCTGCCAAGAAACACGGGCTAAGCATCCGGGGgtaagtgagt ... ggtctctcagGTACGTGTCATGTGTGATTGCTTG-CCCCGTTGGAGGCGCAACCGATCCGG
EST: TACCGCGGCGTCACAGCGGCTGCCAAGAAACACGGGCTAAGCATCCGGGG GTACGTGTCATGTGTGATTGCTTGCCCCGTTGGAGGCGCAAACCGATCCGG
genomic: TACCGCGGCGTCACAGCGGCTGCCAAGAAACACGGGCTAAGCATCCGGGGgtaagtgagt ... ggtctctcagGTACGTGTCATGTGTGATTGCTTGCCCCGTTGGAGGCGC-AACCGATCCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTCTCCAGGTCCAACATCAACTGCACCATCGAGGAGAGCCTTGCTCGGTACCGCGGCGTCACAGCGGCTGCCAAGAAACACGGGCTAAGCATCCGGGGgtaagtgagtcgatcgatttttctttctttctttcccgcctcttcaagtccgtgtgatgtggtctgaattcctctgttggtctctcag
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