Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaatttcttggttaatgagggtagctacactctatttcagttttgcttggttgtttatgcgcttctaggcttctactttatttttttccttgtcat...

Basic information

species Zea mays
transcript GRMZM2G095114_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095114_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g15310.1 (Oryza sativa), 5'ss of exon 4
GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaatttcttggttaatgagggtagct-acactctatttcagttttgct---tggttgtttatgcgcttctaggcttctactttatttttttccttgtcat
|||||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||| |    |  | |   | | | ||  | |  ||  | ||||||   ||  ||||||  |   | |   || |  ||  ||  |   ||||     
GATGGTGATAAGTTTTGGAGGATGCCAGAATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGgtatggatttttaacatgttaaaccttgtttactatgtgcttgtggtttgctggttgtatgtttagacatgtatgttctccatctgcataatcagccttt----

upper sequence: GRMZM2G095114_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA10G02380.1 (Glycine max), 5'ss of exon 4
GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaatttcttggttaatgagggtagctacactctatttcagttttgcttggttgtttatgcgcttctaggcttctactttatttttttccttgt-cat-----------------------------------------
||||| || |  |||||| | ||||| ||||| |||||||| || || ||||| ||||| ||||| |||||||||||||| ||   | || |||   | ||      ||   | | ||    ||  |       | ||  |  |||||  |    |    ||   | ||  |  | |||                                         
GATGGAGATAGATTTTGGCGTATGCCCGAGTGCTACATTCGCGGCAATACCATAAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctgct-ggtgcttcagtcgttttatgtttttttctctttcagtgaataaggttcagaacttcttagtgaatgtggtaagctcttagtgatgcattcatttatccactgatctagctttacttcctgttgatttag

upper sequence: GRMZM2G095114_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA02G17430.2 (Glycine max), 5'ss of exon 4
GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaatttcttggttaatgag---ggtagctacactctatttcagttttgcttgg---ttgtttatgcgcttctaggcttctactttatttttttccttgtcat------------------------------
||||| || |  |||||| | ||||| ||||| ||||||||||| || ||||||||||| ||||| |||||||||||||| ||   | ||   | | |      | |   | | || |   | | |   | |  |   || ||   |    ||      |||   | ||   |    || ||                                
GATGGAGATAGATTTTGGCGTATGCCTGAGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctgctgcttcagtatttttgttttttgctctttcagtgaataaggttcagaacttcttagggaatgtcgtaagctctcggtgatgcatgcatttatccactgatttaaatttacttcctgttcatttag

upper sequence: GRMZM2G095114_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT5G27720.1 (Arabidopsis thaliana), 5'ss of exon 5
GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaatttcttggttaatgagggtagctacactctatttcagttttgcttggttgtttatgcgcttctaggcttctactttatttttttccttgtcat---
|| || || |  |||||||||||||| || ||||| || ||||| ||||| || ||||| ||||||||||| ||||||||   ||||| ||  |   || | ||   || |     |    | | |  ||  || ||| | | | |||           | ||  ||  ||   |||    
GACGGAGATAGATTTTGGAGGATGCCGGAATGTTATATCCGTGGTAACACAATCAAGTACCTTCGAGTTCCGGATGAGgt---aatttttttttgtgtgtgtgtgtatatatctcttgcttgatctagttttttctttgttcccctctctctggaatgatgatgcttagccaaatcagata

upper sequence: GRMZM2G095114_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv14s0060g02240.t01 (Vitis vinifera), 5'ss of exon 4
GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaat--ttcttggttaatgagggtagctacactctatttcagttttgcttggttgtttatgcgcttctaggcttctactttatttttttccttgtcat
||||| || | ||||||||| |||||||| || |||||||||||||| || |||||||||||  |||| ||||| |||||||   |  || ||  || || |    || |  |  |||| |   | ||   |   | |||||||  |  | |   |   || ||||| |   |      |
GATGGAGATAGGTTTTGGAGAATGCCAGAATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAGgtatatttggtttttcattgat-atctaagtttaaagctatattgctattatattcatatttatgc-ttctttgttataggctatatttctaaaccccaagt

upper sequence: GRMZM2G095114_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv07s0005g00230.t01 (Vitis vinifera), 5'ss of exon 6
GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatg---aatttcttggttaatgagggtagctacactctatttcagttttgcttggttgtttatgcgcttctaggcttctactttatttttttccttgtcat
||||| || | ||||||||| ||||| ||||| ||||| |||||||| || ||||| ||||||||||||||||||||||||||    |  ||||  | |        ||||| | |||||  |  ||    |   || ||  | || ||||  ||||     |  |||  | |  | |  |
GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACAATTAAATATCTTCGAGTTCCTGATGAGgtatgtctgaaatcttcctcacatgtttaagctaaa-tctatgacc-ttacagtgcattcttgttacg-ttctttgcttagttgtcttttggtcctattttgt

upper sequence: GRMZM2G095114_T01 (Zea mays), 5'ss of exon 4
lower sequence: EFJ10085 (Selaginella moellendorffii), 5'ss of exon 3
GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaatttcttggttaatgagggtagctacactctatttcagttttgcttggttgtttatgcgcttctaggcttctactttatttttttccttgtcat
||||| |||  ||||||||| ||||| ||||| |||||  | || |||||||| ||||||||||| ||||| || |||||  |   ||     |      | ||  || |      | |  ||   |    | |  | |  | ||||   | ||  ||                    
GATGGAGACCGGTTTTGGAGAATGCCCGAGTGCTACATCAGGGGCAACACCATCAAGTATCTTCGTGTTCCAGACGAGgtgagcgatttccattc-----gcgttactgccgagcttgtttgtgagggagagatcctcactcacttc---gtttgaaccag-----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50324422|gb|CO519548.1|CO519548
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211192048|gb|FL055486.1|FL055486
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTNCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCC-GGTCAG
EST: gi|211194451|gb|FL055502.1|FL055502
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|18165654|gb|BM335493.1|BM335493
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211194439|gb|FL055490.1|FL055490
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211196844|gb|FL055505.1|FL055505
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211196843|gb|FL055504.1|FL055504
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|5468861|gb|AI834652.1|AI834652
EST:     GTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: GTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211196851|gb|FL055512.1|FL055512
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|60356830|gb|DN223803.1|DN223803
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211196849|gb|FL055510.1|FL055510
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|60397418|gb|DN230234.1|DN230234
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211196854|gb|FL055515.1|FL055515
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTT
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTT
EST: gi|211288302|gb|FL055521.1|FL055521
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGCTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|60356922|gb|DN223895.1|DN223895
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|5566778|gb|AI881644.1|AI881644
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211194450|gb|FL055501.1|FL055501
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|78023597|gb|DV491984.1|DV491984
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|9254191|gb|BE344659.1|BE344659
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211194438|gb|FL055489.1|FL055489
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCANGAGGAAACTTCCAAAAGCCGGTCAGATA
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGATA
EST: gi|211194445|gb|FL055496.1|FL055496
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211288305|gb|FL055524.1|FL055524
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCA
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCA
EST: gi|211194444|gb|FL055495.1|FL055495
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         -TGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGC
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGC
EST: gi|211192050|gb|FL055488.1|FL055488
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|13558630|gb|BG549986.1|BG549986
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCACGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|50324421|gb|CO519547.1|CO519547
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|9254192|gb|BE344660.1|BE344660
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|13558629|gb|BG549985.1|BG549985
EST:     CATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: CATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|76012388|gb|DT939558.1|DT939558
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211288303|gb|FL055522.1|FL055522
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGATAGGAAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGATAGGAAG
EST: gi|19350796|gb|BM895328.1|BM895328
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|60337877|gb|DN204850.1|DN204850
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|18180735|gb|BM381945.1|BM381945
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211194452|gb|FL055503.1|FL055503
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211194446|gb|FL055497.1|FL055497
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211196847|gb|FL055508.1|FL055508
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211192049|gb|FL055487.1|FL055487
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGA
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGA
EST: gi|211194440|gb|FL055491.1|FL055491
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGGAACTTCCAAAAGCCGGTCAGATAGGAA
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAGATAGGAA
EST: gi|211194441|gb|FL055492.1|FL055492
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|84980176|gb|DW530525.1|DW530525
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211196856|gb|FL055517.1|FL055517
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211196848|gb|FL055509.1|FL055509
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|17929737|gb|BM266649.1|BM266649
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211288300|gb|FL055519.1|FL055519
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211196855|gb|FL055516.1|FL055516
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTYCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211196852|gb|FL055513.1|FL055513
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|16927222|gb|BM080291.1|BM080291
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|4804030|gb|AI665896.1|AI665896
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211196845|gb|FL055506.1|FL055506
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211288306|gb|FL055525.1|FL055525
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211286858|gb|FL439209.1|FL439209
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211192047|gb|FL055485.1|FL055485
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTT-CCAAAAGCCGGTCAG
EST: gi|18176139|gb|BM351201.1|BM351201
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|211194443|gb|FL055494.1|FL055494
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
EST: gi|71313635|gb|DR793393.1|DR793393
EST:     AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG                         GTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG
genomic: AGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 43 (downstream exon)
Score: 280

GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG


Block sizes: 49 (upstream exon), 43 (downstream exon)
Score: 235

GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG


Block sizes: 48 (upstream exon), 43 (downstream exon)
Score: 173

GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG


Block sizes: 49 (upstream exon), 43 (downstream exon)
Score: 136

GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaattt ... tttccttcagGTGATTGACAAGGTTCAGGAGGAAACTTCCAAAAGCCGGTCAG