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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtacttcatcttgtgattttatttgttatttacttatcaatgaagtgtttagtaggcaaaaacactttgggctagatcatttcaatttgggaatctagtc...

Basic information

species Zea mays
transcript GRMZM2G094497_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 5
GTCTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgta-cttcatcttgtgattttatttgttatttacttatcaa----tgaagtgtttagtaggc-aaaaacactttgggctagatcatttcaatttgggaatctagtc
||||||||||| ||||| ||||||||||||||||| || || |||||||| ||||| ||||||  ||| |||| |   | | ||  |  |||  |  |||     ||   |   ||||     ||     ||    | |  |||| ||  |  ||   |       
GTCTTTGAAGGCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcctcttattcatctcttcctccttttatcttcacttcctggtatccatagtgatttaagtgttctaataggttaatcactttgagctgaacag------

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 5'ss of exon 5
GTCTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtacttcatcttgtgattttatttgttattta-cttatcaatgaagtgtttagtaggcaaaaacactttgggctagatcatttcaatttgggaatctagtc--------
|| ||||||||||| |||||||| |||||||| |  ||||||||||| || ||||| |||||| || | | |   | |   |      |  | | | ||   ||  |||| |   |        | ||  |  |    |||||   ||        | ||         
GTTTTTGAAGGAACATCTGGAATTGACAACAAGTTTACAACCGTGCAATTCACAGGAGAGgtaatttaccataaaaatccttcgtccctccagcatttcgcagatttgttgaaatgattggttgatttctgcttcctgcattttttttaaaccggtttgtgtctttcag

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 5
GTCTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtacttcatcttgtgattttatttgttatttacttatca-atgaagtgtttagtagg---caaaaac---actttgggctagatcatttcaatttgggaatctagtc
|| |||||||| ||||||||||| ||||||||||||||||||||||| ||||| || ||||||      ||| |  || | || ||  ||| |   |    || | | ||  |   |   |  ||||   |    | ||| ||| | |  || |||   |       
GTTTTTGAAGGCACTTCTGGAATTGACAACAAATACACAACCGTGCAATTTACTGGGGAGgtataaagccttttctttcttttagtgttttgcaatttgtgtggaatattctgcttggtccttaaaccggatacagagctggataagtgaaacttgcata-------

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 5
GTCTTTGAAGGAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtacttcatcttgtgattttatttgttatttacttatcaatgaagtgtttagtaggcaaaaacactttgggctagatca--tttcaatttgggaatctagtc
|| |||||||||||||||||||| ||||||||||||||||| || || |||||||| ||||||    ||||| |  ||  || |||   |||    |||| | ||  | |      |     ||     | ||||   |  ||||    | | |  |   | 
GTTTTTGAAGGAACTTCTGGAATTGACAACAAATACACAACTGTTCAATTTACAGGGGAGgtataaaatctttttcttgcatctgtcccttatcattcaa-gcagaatatcaggaacttttgcagaactgcctagcataggtttctgcctagcatgcacat-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32910787|gb|CF015599.1|CF015599
EST:     GACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGT
genomic: GACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtacttcatc ... tcttttacagGTTTTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32929168|gb|CF033980.1|CF033980
EST:     AACTTCTGGAATAGACAACAAATACACANCCGTGCAG-TTACAGGCNGAG                         GTTTTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGG
genomic: AACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGC-GAGgtacttcatc ... tcttttacagGTTTTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGG
EST: gi|32838409|gb|CD978087.1|CD978087
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtacttcatc ... tcttttacagGTTTTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|32850751|gb|CD990432.1|CD990432
EST:     TGCAGTTTACAGGCGAG                         GTTTTGANAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGT
genomic: TGCAGTTTACAGGCGAGgtacttcatc ... tcttttacagGTTTTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|194716810|gb|FK933969.1|FK933969
EST:     GAACTTCTGGAATAGACAACAAATACACAACTGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtacttcatc ... tcttttacagGTTTTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGT
EST: gi|33102277|gb|CF062237.1|CF062237
EST:     GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAG                         GTTTTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGT
genomic: GAACTTCTGGAATAGACAACAAATACACAACCGTGCAGTTTACAGGCGAGgtacttcatc ... tcttttacagGTTTTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGT