1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGGACATGTTGCACCCCCAATGTCGTCAAACTTCTTTGCTGAATTTGGGATGGACAGTGGATATCAGAAAAAATCTACGTCCAGTTCATCCAAAGTGCAGgtaactgttttattcatacatatacgataaatcatgaatatgcgaactccattgagaaagtactttgtgaagttagaatacaaagagaaaatttggttcc...
species | Zea mays |
transcript | GRMZM2G094390_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGACAGTGGATATCAGAAAAAATCTACGTCCAGTTCATCCAAAGTGCAG ATTGAGGAAAGCAGGGAAGCAAGACAGAAATTCTCAAAAGCGAAATCEST: gi|211282617|gb|FL407044.1|FL407044
genomic: TGGACAGTGGATATCAGAAAAAATCTACGTCCAGTTCATCCAAAGTGCAGgtaactgttt ... tgttgttcagATTGAGGAAAGCAGGGAAGCAAGACAGAAATTCTCAAAAGCGAAATC
EST: TGGACAGTGGATATCAGAAAAAATCTACGTCCAGTTCATCCAAAGTGCAG ATTGAGGAAAGCAGGGAAGCAAGACAGAAATTCTCAAAAGCGAAATCAATTEST: gi|211309534|gb|FL415792.1|FL415792
genomic: TGGACAGTGGATATCAGAAAAAATCTACGTCCAGTTCATCCAAAGTGCAGgtaactgttt ... tgttgttcagATTGAGGAAAGCAGGGAAGCAAGACAGAAATTCTCAAAAGCGAAATCAATT
EST: TGGACAGTGGATATCAGAAAAAATCTACGTCCAGTTCATCCAAAGTGCAG ATTGAGGAAAGCAGGGAAGCAAGACAGAAATTCTCAAAAGCGAAATCAATTEST: gi|67011400|gb|CO440149.1|CO440149
genomic: TGGACAGTGGATATCAGAAAAAATCTACGTCCAGTTCATCCAAAGTGCAGgtaactgttt ... tgttgttcagATTGAGGAAAGCAGGGAAGCAAGACAGAAATTCTCAAAAGCGAAATCAATT
EST: TGGACAGTGGATATCAGAAAAAATCTACGTCCAGTTCATCCAAAGTGCAG ATTGAGGAAAGCAGGGAAGCAAGACAGAAATTCTCAAAAGCGAAATCAATT
genomic: TGGACAGTGGATATCAGAAAAAATCTACGTCCAGTTCATCCAAAGTGCAGgtaactgttt ... tgttgttcagATTGAGGAAAGCAGGGAAGCAAGACAGAAATTCTCAAAAGCGAAATCAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGACATGTTGCACCCCCAATGTCGTCAAACTTCTTTGCTGAATTTGGGATGGACAGTGGATATCAGAAAAAATCTACGTCCAGTTCATCCAAAGTGCAGgtaactgttttattcatacatatacgataaatcatgaatatgcgaactccattgagaaagtactttgtgaagttagaatacaaagagaaaatttggttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagaaa