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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTGgtaagtcacattctctttctgtatttaaatactataaatgtgcaattttgcattgacttgatgtgcctgtcatatatgcattcgtaaacctcaagtgctg...

Basic information

species Zea mays
transcript GRMZM2G094255_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094255_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g52710.1 (Oryza sativa), 5'ss of exon 4
GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTGgtaagtcacattctcttt---ctgtatttaaatactataaatgtgcaattttgcattgacttgatgtgcctgtcatatatgcattcgtaaacctcaagtgctg
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GCACTACTTGAAGCACTTGGAGATCGAAAAGGAATTAATCGGTTTGGGCATTTTACAGCACCACTTGATGAGGCAGCGGTTGAGGTTATACTGgtacatgctatcatcctggcattgcgtttacatactgcaaatgtatatacttccctgcatttc-tacgtttgt-attcatgtggccataattctcttatgcc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76281018|gb|DV020586.1|DV020586
EST:     TTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTG                         GATCTGTCTGGTCGCCCTCATTTAAGCTGTGGCTTAGATATTCCTACTCAA
genomic: TTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTGgtaagtcaca ... ctgtatccagGATCTGTCTGGTCGCCCTCATTTAAGCTGTGGCTTAGATATTCCTACTCAA
EST: gi|211006666|gb|FL081503.1|FL081503
EST:     TTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTG                         AATCTGTCTGGTCGCCCTC
genomic: TTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTGgtaagtcaca ... ctgtatccagGATCTGTCTGGTCGCCCTC
EST: gi|211003886|gb|FL081493.1|FL081493
EST:     TTGGTCATTTTACAGCACCGCTTGATGAAGCAGCGGGTGAGGTTATACTG                         GATCTGTCTGGGTCGCC-TCATTTAAGCTGTGGCTT
genomic: TTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTGgtaagtcaca ... ctgtatccagGATCTGTCTGG-TCGCCCTCATTTAAGCTGTGGCTT
EST: gi|149110134|gb|EE293952.2|EE293952
EST:     TTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTG                         GATCTGTCTGGTCGCCCTCATTTAAGCTGTGGCTTAGATATTCCTACTCAA
genomic: TTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTGgtaagtcaca ... ctgtatccagGATCTGTCTGGTCGCCCTCATTTAAGCTGTGGCTTAGATATTCCTACTCAA
EST: gi|88757021|gb|DY541162.1|DY541162
EST:     TTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTG                         GATCTGTCTGGTCGCCCTCATTTAAGCTGTGGCTTAGATATTCCTACTCAA
genomic: TTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTGgtaagtcaca ... ctgtatccagGATCTGTCTGGTCGCCCTCATTTAAGCTGTGGCTTAGATATTCCTACTCAA
EST: gi|101397352|gb|EB820599.1|EB820599
EST:     TTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTG                         GATCTGTCTGGTCGCCCTCATTT
genomic: TTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTGgtaagtcaca ... ctgtatccagGATCTGTCTGGTCGCCCTCATTT
EST: gi|50325237|gb|CO520363.1|CO520363
EST:     TTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTG                         GATCTGTCTGGTCGCCCTCATTTAAGCTGTGGCTTAGATATTCCTACTCAA
genomic: TTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTGgtaagtcaca ... ctgtatccagGATCTGTCTGGTCGCCCTCATTTAAGCTGTGGCTTAGATATTCCTACTCAA
EST: gi|50323498|gb|CO518624.1|CO518624
EST:     TTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTG                         GATCTGTCTGGTCGCCCTCATTTAAGCTGTGGCTTAGATATTCCTACTCAA
genomic: TTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTGgtaagtcaca ... ctgtatccagGATCTGTCTGGTCGCCCTCATTTAAGCTGTGGCTTAGATATTCCTACTCAA