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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAACCTGGTGAATTTGGTCGGCTACTGCGCCGACAAAGGGCAGCATATGCTACTGTACGCGTACATGCCGAACGGGAGCCTTGCGTCACACTTATACGgcatgtattttgattttcttttatgcaaaaacttcgtttgtttcaacaagtgaactccttgttttttatagctagctgaacattcttttctgtggctcgatcag

Basic information

species Zea mays
transcript GRMZM2G093858_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093858_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g04420.1 (Oryza sativa), 5'ss of exon 3
AGGAACCTGGTGAATTTGGTCGGCTACTGCGCCGACAAAGGGCAGCATATGCTACTGTACGCGTACATGCCGAACGGGAGCCTTGCGTCACACTTATACGgcatg---tattttgattttcttttatgcaaaaacttcgtttgtttcaacaagtgaactc----cttgttttttatagctagctgaacattcttttctgtggctcgatcag
|||||||||||||||||||| ||||| ||||| || |||||||||||||||||| | || || | |||||| || || |||||||| || |||||||| || ||    ||| |  || |  |   |||| | |  |||  |||    |||  |||  |||     || |||||| | |||  || || || ||||| | ||| |       
AGGAACCTGGTGAATTTGGTTGGCTATTGCGCTGAAAAAGGGCAGCATATGCTATTATATGCATTCATGCCTAATGGAAGCCTTGCATCGCACTTATATGgtattcattatctccatatgatagcatgctatactttc--ttgaaagaacctgtgccctcagttttttttttttttggctttcttaatatcctttt-tatggtttag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148928132|gb|EC872655.2|EC872655
EST:     GCTACTGTACGCGTACATGCCGAACGGGAGCCTTGCGTCACACTTATACG                         GCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGG
genomic: GCTACTGTACGCGTACATGCCGAACGGGAGCCTTGCGTCACACTTATACGgcatgtattt ... gctcgatcagGCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGG
EST: gi|149073410|gb|EE161714.2|EE161714
EST:     GCTACTGTACGCGTACATGCCGAACGGGAGCCTTGCGTCACACTTATACG                         GCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGG
genomic: GCTACTGTACGCGTACATGCCGAACGGGAGCCTTGCGTCACACTTATACGgcatgtattt ... gctcgatcagGCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGG
EST: gi|148930222|gb|EC872656.2|EC872656
EST:     GCTACTGTACGCGTACATGCCGAACGGGAGCCTTGCGTCACACTTATACG                         GCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGG
genomic: GCTACTGTACGCGTACATGCCGAACGGGAGCCTTGCGTCACACTTATACGgcatgtattt ... gctcgatcagGCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGG
EST: gi|148997914|gb|EE035902.2|EE035902
EST:     GCTACTGTACGCGTACATGCCGAACGGGAGCCTTGCGTCACACTTATACG                         GCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGG
genomic: GCTACTGTACGCGTACATGCCGAACGGGAGCCTTGCGTCACACTTATACGgcatgtattt ... gctcgatcagGCGAAGACAGTGCGCCACTAAAGTGGGACTTGAGAGTAAGCATCGCTCTGG