1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TCACGGTTGGAGGTTACACAGATTTCTTTTGTTCTGTGCACCATGCAAGGAACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgttttctctgataatgtgctttattgggatttgtggggaacaaaacaggagagctgcgtgtcatttcattaagaagaaacgaaattagtaaca...
species | Zea mays |
transcript | GRMZM2G093359_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTCEST: gi|211516878|gb|FK974814.1|FK974814
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: ACTGCGGATTCATCTTCCGAGGGCCGCAGACTCC-GTTAATCCAAAATTG GTTTTATCTTCCA-TAGGATACAATGGACGAEST: gi|149089319|gb|EE178541.2|EE178541
genomic: ACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAA-TTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGA
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTCEST: gi|211514522|gb|FK974800.1|FK974800
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: CTGCGGATTCAATCTTCCGAGGGCCGCAGACTCCAGTTAATCCCAAATTG GTTTTATCTTCCAATAGGAEST: gi|211153843|gb|FK974844.1|FK974844
genomic: CTGCGGATTCA-TCTTCCGAGGGCCGCAGACTCCAGTTAATCC-AAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGA
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTEST: gi|149008951|gb|EE041170.2|EE041170
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGT
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTCEST: gi|60401451|gb|DN234258.1|DN234258
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: GGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTCEST: gi|29168004|gb|CB411264.1|CB411264
genomic: GGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAEST: gi|211153845|gb|FK974846.1|FK974846
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATA
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCAATAGGEST: gi|12046552|gb|BF728691.1|BF728691
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGG
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTCEST: gi|149104775|gb|EE290237.2|EE290237
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCNATAGGATACAATGGACGAGCATCATCTATAGEST: gi|19058676|gb|BM737343.1|BM737343
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAG
EST: CGAGGGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTCEST: gi|86466218|gb|DY232591.1|DY232591
genomic: CGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCAATAGGATACAATGAACGAGCATCATCTATAGTTGTGTCEST: gi|211514526|gb|FK974804.1|FK974804
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: ACTGCGGATTCATCTTCCGAGGGCCGCAGACTCC-GTTAATCCCAAATTG GTTTTATCTTCCAATAGGATACEST: gi|149094603|gb|EE180134.2|EE180134
genomic: ACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCC-AAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATAC
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTCEST: gi|101398071|gb|EB820910.1|EB820910
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTCEST: gi|211516883|gb|FK974819.1|FK974819
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTTATCCAAATTG GTTTTATCTTCCAATAGGGATACA-TGGACGAGCATCATCTATAGTTGTGTEST: gi|93015898|gb|EB641418.1|EB641418
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGG-ATACAATGGACGAGCATCATCTATAGTTGTGT
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATTGTTGTGTCEST: gi|211512177|gb|FK974795.1|FK974795
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCCAATTG GGTTTTATCTTCCAEST: gi|31350712|gb|CD435069.1|CD435069
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagG-TTTTATCTTCCA
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTCEST: gi|31355275|gb|CD439632.1|CD439632
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTCEST: gi|71424525|gb|DR806344.1|DR806344
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTCEST: gi|148983250|gb|EE029217.2|EE029217
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: ACTGCGGATTCATCTTTCC-AGGGCCGCAGACTCCAGTTAATCCCAATTG GTTTTATCTTCCEST: gi|149106513|gb|EE188405.2|EE188405
genomic: ACTGCGGATTCATCTT-CCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCC
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTCEST: gi|89253028|gb|DY624814.1|DY624814
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTCEST: gi|211516880|gb|FK974816.1|FK974816
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGGACGAGCATCATCTATAGTTGTGTC
EST: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTG GTTTTATCTTCCAATAGGATACAATGG
genomic: AACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgtt ... gttcattcagGTTTTATCTTCCAATAGGATACAATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACGGTTGGAGGTTACACAGATTTCTTTTGTTCTGTGCACCATGCAAGGAACTGCGGATTCATCTTCCGAGGGCCGCAGACTCCAGTTAATCCAAATTGgtaatgtgttttctctgataatgtgctttattgggatttgtggggaacaaaacaggagagctgcgtgtcatttcattaagaagaaacgaaattagtaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaagaa