Sequence
atgc intronic sequence ATGC exonic sequenceTGACAAAGGTGAAATGTGTGCGATGAAGGAGGTTACTCTTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTGTGCCAGgtatgttgttttgtacatgttcacactcaatattgaaaactacacatgttcatcatgcctcatgctgtacttcctcttttaacattattatcacatctcacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g44642.1 (Oryza sativa), 5'ss of exon 4
TGACAAAGGTGAAATGTGTGCGATGAAGGAGGTTACTCTTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTGTGCCAGgtatgttgttttgtacatgttcacactcaatattgaaaactacacatgttcatcatgcctcatgctgtacttcctcttttaacattattatcacatctcacag
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TGATAAAGGTGAAATGTGTGCAATGAAGGAGGTCACCCTTTTCTCAGACGATCCTAAATCAAAAGAAAGTGCAAAGCAGTTGTGTCAGgtatgacatttt-----tctccacgtttactgtccttttctttacgctatcttctctgctcttatatta-ttctttatttaccag------------------
upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA16G30030.2 (Glycine max), 5'ss of exon 4
TGACAAAGGTGAAATGTGTGCGATGAAGGAGGTTACTCTTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTGTGCCAGgtatgttg------ttttgtacatgttcacactcaatattgaaaactacacatgttcatcatg--cctcatgctgtacttcctcttttaacattattatcacatctcacag---------------------------------
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GGAAAGTGGTGAAATGTGTGCTATGAAAGAGGTAACTCTTTTTTCAGATGATGCCAAATCTAAAGAGAGTGCTAAGCAATTAATGCAGgtaaatagatttcctttttgacctttgaaatttttttgtgggactgaatagatttcctttttgacctttgtgcaatatgtcagtatctatttctgtt-tcaaatttggtgtagctttgaaaatctaactcccagattctggcag
upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA09G24970.2 (Glycine max), 5'ss of exon 3
TGACAAAGGTGAAATGTGTGCGATGAAGGAGGTTACTCTTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTGTGCCAGgtatgttg-----ttttgtacatgttcacactcaatattgaa---aactacacatgttcatcatgcctcatgct-gtacttcctcttttaacattattatcacatctcacag-----------------------
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GGAAAGTGGTGAAATGTGTGCTATGAAAGAGGTAACTCTGTTTTCAGATGATGCCAAATCTAAAGAAAGTGCTAAGCAATTAATGCAGgtaaattgatttcctttttgacctttgaaattttttgtggggctgaataatcctcattctttgtgcaaaatgctagtatctatttctgtttcaaatttagtgtagctttcaaatctaactcctagattctggcag
upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA01G42960.1 (Glycine max), 5'ss of exon 3
TGACAAAGGTGAAATGTGTGCGATGAAGGAGGTTACTCTTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTGTGCCAGgtatgttgttttgtacatgttcacactcaatattgaaaactacacatgttcatcatgcctcatgctgtacttcctcttttaac--attattatcacatctcacag
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TGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACTCTTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCTCAACAACTTGGCCAAgtaagcttgctcttatcgattaacac---acttcctccattacatatgcctcatttttaaagtggaaaacaacttaatttactgaattaccattaccccctcc--
upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G01880.1 (Glycine max), 5'ss of exon 3
TGACAAAGGTGAAATGTGTGCGATGAAGGAGGTTACTCTTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTGTGCCAGgtatgttgttttgtacatgttcacactcaatattgaaaactac-acatgttcatcatgcctcatgctgtacttcctcttttaacattattatcacatctcacag
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AGAATGTGGTGAGATGTGTGCAATGAAGGAGGTAACCCTTTTTTCTGATGATGCTAAATCAAGGGAAAGTGCGCAGCAACTTGGCCAAgtaagcttgcttgtgta-gattaggtggaatac--atttctatgatccattttacttgttttacacttgcttttctttgggaatgtccatattatgtctcatt-
upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA09G24970.1 (Glycine max), 5'ss of exon 4
TGACAAAGGTGAAATGTGTGCGATGAAGGAGGTTACTCTTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTGTGCCAGgtatgttgttttgtacatgttcacactcaatattgaaaactacac---atgttcatcatgcctcatgctgtacttcctcttttaacattattatcacatctcacag--
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GGAAAGTGGTGAAATGTGTGCTATGAAAGAGGTAACTCTGTTTTCAGATGATGCCAAATCTAAAGAAAGTGCTAAGCAATTAATGCAGgtaaattgatttc--ctttttgacctttgaaattttttgtggggctgaataatcctcattctttgtgcaaaatgctagtatctatttctgtt-tcaaatttagtgtag
upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 6
TGACAAAGGTGAAATGTGTGCGATGAAGGAGGTTACTCTTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTGTGCCAGgtatgttgttttgtacatgttcacactcaatattgaaaactacacatgttcatcatgcctcatgctgtacttcctcttttaacattattatcacatctcacag
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TGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACTCTTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCTCAACAACTTGGCCAAgtaagct-tgctctatcgattaacacac--cattacatatacctcatttttaaagtggaaaacaacctaatttacccccccccccccccccctcctttactaa
upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT1G63700.1 (Arabidopsis thaliana), 5'ss of exon 3
TGACAAAGGTGAAATGTGTGCGATGAAGGAGGTTACTCTTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTGTGCCAGgtatgttgttttgtacatgttcacactcaatattgaaaactacac----atgttcatcatgcctcatgctgta---cttcctcttttaacattattatcacatctcacag
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TGAAAGTGGGGAGATGTGTGCCATGAAAGAGGTTACTCTATGCTCAGATGATCCTAAGTCAAGGGAGAGTGCACAACAATTGGGGCAAgtaagttacacatcat-catctgttcagaacaacggaagctgctctttggtgcttttgtttttgaattttctaacctttctgcttctctttcaatgattgactctcgcag
upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 3
TGACAAAGGTGAAATGTGTGCGATGAAGGAGGTTACTCTTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTGTGCCAGgtatgttgttt----tgtacatgttcaca----ctcaatattg-aaaactacaca------tgttcatcatgcctcatgctgtacttcctcttttaacattattatcacatctcacag-------------------------------------------------------------
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TGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTGACACTATTTTCAGATGATGCAAAGTCAAAGGAAAGTGCAAAACAGTTGGGGCAAgtaagttgtttccattcagcagaattacagaggttccatttcacaaaaggatgcagtttgttgcttttctacacattttctgttgtttgtcttttcaaatgagaatctctctccatttacttcctgttttggtgttttacatagtttgagggaagttcttactctcagtgctttggcag
upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv02s0025g03370.t01 (Vitis vinifera), 5'ss of exon 5
TGACAAAGGTGAAATGTGTGCGATGAAGGAGGTTACTCTTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTGTGCCAGgtatgttgtttt--gtacatgttc---acactcaata---ttgaaaactacacatgttcatcatgcctcatgctgtacttcctcttttaacattattatcacatctcacag----------------------
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TGAAAGTGGGGAGATGTGTGCAATGAAGGAGGTTACATTATTTTCAGATGATGCGAAGTCAAAGGAAAGTGCACAGCAGCTGGGCCAAgtaagttttctctagtagatatgctggaaacttgctggttttgaagaaaaaaactggttttttttttttttttttggcaccttcttgcacagttaa-aggacaaattataaacttaccagtgctatttggcag
upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv02s0025g03850.t01 (Vitis vinifera), 5'ss of exon 2
TGACAAAGGTGAAATGTGTGCGATGAAGGAGGTTACTCTTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTGTGCCAGgtatgttgttt----tgtacatgtt-----cacactcaatattgaaaactacacatgttcatcatgcctcatgctg--tacttcctcttttaacattattatcacat-ctcacag--------------
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TGAAAGTGGGGAGATGTGTGCAATGAAGGAGGTTACATTATTTTCAGATGATGCGAAGTCAAAGGAAAGTGCACAGCAGCTGGGCCAAgtaagttttctctagtagatacgctggaaacttacttgttttgaagaaaaaaactggtttttttttttttttggcaccttcttgcacagttgaaggaaaaattataaacttaccagtgctatttggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211515221|gb|FL355394.1|FL355394EST: TTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTGTGCCAG GAAATATCACTTCTGAGCCGACTGCAGCACCCAAACATTGTGCGATACTAT
genomic: TTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTGTGCCAGgtatgttgtt ... catctcacagGAAATATCACTTCTGAGCCGACTGCAGCACCCAAACATTGTGCGATACTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGACAAAGGTGAAATGTGTGCGATGAAGGAGGTTACTCTTTTCTCAGATGATCCTAAATCAAAAGAAAGTGCAAAACAGCTGTGCCAGgtatgttgttttgtacatgttcacactcaatattgaaaactacacatgttcatcatgcctcatgctgtacttcctcttttaacattattatcacatctcacag
- - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG