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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTGATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAACgtacgtgatttctcacttcttatttcttccctccattatgttattcttctactgtgtagaagtttttaacagtttgcatcttgctctatgcag

Basic information

species Zea mays
transcript GRMZM2G092988_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092988_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g09460.1 (Oryza sativa), 5'ss of exon 5
GACCTGATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAACgtacgtgatttctcacttcttatttcttccctccattatgttattcttctac-tgtgtagaagtttttaacagtttgcatcttgctctatgcag------
||||||||||||||||||||||||||||||| || |||||||||||| |||| ||||| ||| |  || |   ||   |||||  | ||||     | |||| | |  || |   |     |    | || |  ||||  | |     |      
GACCTGATGACATGCCAGCACATATTAAATCATCAATGTTTGGTTGTGCCCTGACgtatgtgttccctaatccctacattcttttccccatgtcaattttctcccaagtgagccaacaaaatattaaattagattcttcttttgcattgcttcag

upper sequence: GRMZM2G092988_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA07G34680.2 (Glycine max), 5'ss of exon 5
GACCTGATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAACgtacgtgat-ttctcacttcttatttcttccctccattatgtta--ttcttctactgtgtagaagtttttaacagtttgcatcttgctctatgcag
| || |||||||||||||| ||||||||||| || |||||||||||| | || ||||  |  ||  |  || || | | ||        |||  ||  |  || |  || ||| ||  |  |  |  ||  ||  || ||    | |  ||
GGCCAGATGACATGCCAGCTCATATTAAATCATCGATGTTTGGTTGTACACTCACgtgagcaatacttccatttttcagtttgatttatcatgctgaaaagttatggtaatgt-tatgaactactggcatcttatatttttacttttttag

upper sequence: GRMZM2G092988_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA15G17340.2 (Glycine max), 5'ss of exon 3
GACCTGATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAACgtacgtgatttctcacttcttatttcttccctccattatgttattcttctactgtgtagaagtttttaacagtttgcatcttgctctatgcag
| || ||||||||||| |||||||||||||| || |||||||||||| | || | ||  || |||| |      | ||||         ||||||  |    | || | |    ||     | | |  |||  | ||    |  |   
GGCCAGATGACATGCCGGCACATATTAAATCGTCGATGTTTGGTTGTGCACTCATgtgagttatttgttcaaattgattt---------attatgcgaggaatatattatcatcaatccactgatatattgtgtttttaatttag---

upper sequence: GRMZM2G092988_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv18s0122g00190.t01 (Vitis vinifera), 5'ss of exon 5
GACCTGATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAACgtacgtgatttctcacttcttatttcttccctccattatgttattcttctactgtgtagaagttt-ttaacagtttgcatcttgctctatgcag------------
| || ||||||||||||||||| || |||||||| |||||||||||    || |||||  |||||||  | ||  | |  |||   |   || | || || || |  | | || || ||  ||| ||  || |   || ||   |                
GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTCTCACgta-atgatttc--attttctttggctttttttttttttttttttttttttgtctataaaatttcattaccaaattaccatttacttggtttttattgttgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37379268|gb|CF626373.1|CF626373
EST:     GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAAC                         GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
genomic: GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAACgtacgtgatt ... ctctatgcagGATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
EST: gi|211194336|gb|FL162075.1|FL162075
EST:     GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAAC                         GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
genomic: GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAACgtacgtgatt ... ctctatgcagGATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
EST: gi|18180641|gb|BM381851.1|BM381851
EST:     GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAAC                         GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
genomic: GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAACgtacgtgatt ... ctctatgcagGATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
EST: gi|211191945|gb|FL162071.1|FL162071
EST:     CCCGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAAC                         GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
genomic: GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAACgtacgtgatt ... ctctatgcagGATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
EST: gi|16919476|gb|BM074210.1|BM074210
EST:     GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAAC                         GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
genomic: GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAACgtacgtgatt ... ctctatgcagGATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
EST: gi|84977403|gb|DW475825.1|DW475825
EST:     GATGACATGCCAGCACATATTGAATCTTCTATGTTTGGTTGTTCCCTAAC                         GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
genomic: GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAACgtacgtgatt ... ctctatgcagGATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
EST: gi|14245643|gb|BG874225.1|BG874225
EST:     GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAAC                         GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
genomic: GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAACgtacgtgatt ... ctctatgcagGATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
EST: gi|6695846|gb|AW288954.1|AW288954
EST:     GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAAC                         GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
genomic: GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAACgtacgtgatt ... ctctatgcagGATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
EST: gi|37381219|gb|CF627481.1|CF627481
EST:     GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAAC                         GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
genomic: GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAACgtacgtgatt ... ctctatgcagGATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
EST: gi|211194338|gb|FL162077.1|FL162077
EST:     ATGACATGCCAGCACATATTAAATCTTCTAATGTTTGGTTGTTCCCTAAC                         GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
genomic: ATGACATGCCAGCACATATTAAATCTTCTA-TGTTTGGTTGTTCCCTAACgtacgtgatt ... ctctatgcagGATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
EST: gi|211121910|gb|FL435147.1|FL435147
EST:     GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAAC                         GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
genomic: GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAACgtacgtgatt ... ctctatgcagGATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
EST: gi|211191948|gb|FL162074.1|FL162074
EST:     GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAAC                         GATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG
genomic: GATGACATGCCAGCACATATTAAATCTTCTATGTTTGGTTGTTCCCTAACgtacgtgatt ... ctctatgcagGATTCCTATAACTGATGGACGTCTCAATACGGGCACTTGGCAG