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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatctgttttatgctgttttcttattgaataagtgcttggtttgttttctgcttgagattattgcgttttagggtcctagtcaaggcaatatttt...

Basic information

species Zea mays
transcript GRMZM2G092975_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092975_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g43570.1 (Oryza sativa), 5'ss of exon 5
ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatctgttttatgctgttttcttattgaataagtgcttggtttgttttctgcttgagattattgcgttttagggtcctagtcaa--ggcaatatttt---
||| || ||||| || |||||||| || || |||||||||||||| ||||| |  |||||||||||||| ||||||||| | ||||||||||| ||||| |||  ||  ||||||  | || | | |    ||  ||| ||||     |   |||  | |   |  || |  |  || |  |   || || |   
ATTTGGACCATACTTCTGCCAGCCTGTTATCGCTGGACTTGGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatcagttcaattgtgtttttgtttttattcaaa--ttaatttcttttggatct---attcatacacatctggatggttatccattgctcatgttctgca

upper sequence: GRMZM2G092975_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA04G42830.1 (Glycine max), 5'ss of exon 2
ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatctgttttatgctgttttcttattgaataagtgcttggtttgttttctgcttgagattattgcgttttagggtcctagtcaaggcaatatttt
 || || ||||| ||||||||||| || ||||||||||| ||||||||  ||  |||||| ||||| || |||||   | | || |||||||| || |  ||  | ||     || ||      | |||| |  |   | ||  || || ||     | |  |  |      |  || |    | |||| 
GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGACAAACCATTCATTTGCACAATGGATGCCATTGGAGCAAAgtaagtttaagtaatctgtgcccttatttactgtttagtgttgaggaaggttagtgttttagtgatattcactgcatacatttcttctataatagatttc

upper sequence: GRMZM2G092975_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA06G11930.1 (Glycine max), 5'ss of exon 2
ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatctgttttatgctgttttcttattgaataagtgcttggtttgttttctgcttgagattatt-gcgttttagggtccta---gtcaaggcaatatttt--
 || || ||||| ||||||||||| || ||||||||||| ||||||||  ||   ||||| ||||| || |||||   | | || |||||||| || |  || ||||  | |  |||    |      |  ||    ||||   || |   ||   || | ||| |||||         ||| | | | ||||   
GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGACAAGCCATTCATTTGCACAATGGATGCCATTGGAGCAAAgtaagtttaagtattattgtataatct----gtgcccttattta--ctgttcagtgttgaggaaagttagtgttatagggattggcatatcacgtctagatttctt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50328691|gb|CO523817.1|CO523817
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|37377268|gb|CF625223.1|CF625223
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGTTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|37378530|gb|CF625957.1|CF625957
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|47962777|gb|CN845486.1|CN845486
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACA
EST: gi|211069213|gb|FL305343.1|FL305343
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATSAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|4887391|gb|AI677490.1|AI677490
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|211071940|gb|FL305347.1|FL305347
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|211071943|gb|FL305350.1|FL305350
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|18964243|gb|BM660894.1|BM660894
EST:     GAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|113703164|gb|EE680668.1|EE680668
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|50328692|gb|CO523818.1|CO523818
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|71329112|gb|DR801265.1|DR801265
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATTTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|67017133|gb|CO445882.1|CO445882
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTANGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|148965852|gb|EE016749.2|EE016749
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|78180178|gb|DV550551.1|DV550551
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAG                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|148965851|gb|EE016748.2|EE016748
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATTTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|113808812|gb|DW929818.1|DW929818
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATC
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATC
EST: gi|71329114|gb|DR801266.1|DR801266
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|71759696|gb|DR957633.1|DR957633
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATTTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|6827536|gb|AW331179.1|AW331179
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAG                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|4573353|gb|AI586912.1|AI586912
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|113701140|gb|EE678644.1|EE678644
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|67016388|gb|CO445137.1|CO445137
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTANGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|67022320|gb|CO451069.1|CO451069
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|67041562|gb|CO467817.1|CO467817
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTANGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|91877573|gb|EB407530.1|EB407530
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|50323661|gb|CO518787.1|CO518787
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|67028880|gb|CO457629.1|CO457629
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|37380700|gb|CF627177.1|CF627177
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|211071942|gb|FL305349.1|FL305349
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|71438822|gb|DR819872.1|DR819872
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|76909375|gb|DV163351.1|DV163351
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|12046147|gb|BF728286.1|BF728286
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAG                         GGAGCTGGCCAAGGATTTTGGTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|71303012|gb|DR787617.1|DR787617
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|148973855|gb|EE024997.2|EE024997
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|37393439|gb|CF633984.1|CF633984
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|40336492|gb|CK370562.1|CK370562
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|78107042|gb|DV525460.1|DV525460
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|148973856|gb|EE024998.2|EE024998
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|50323660|gb|CO518786.1|CO518786
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|211071944|gb|FL305351.1|FL305351
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCT
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCT
EST: gi|88750610|gb|DY534751.1|DY534751
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|116823354|gb|EC866875.1|EC866875
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
EST: gi|37381438|gb|CF627606.1|CF627606
EST:     GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 333

ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 310

ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 375

ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 320

ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTATCTGGGACAGCATCAGAATCTTTGTATGGTGCTTGTGAGTCCATGTACAAGCCGAACATG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAAgtaggtatctgttttatgctgttttcttattgaataagtgcttggtttgttttctgcttgagattattgcgttttagggtcctagtcaaggcaatatttt

- - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - -  GAGATG