Sequence
atgc intronic sequence ATGC exonic sequenceGGACAGGAAGTCGTCTCACTTCAGGAAGGGCTATGATGCTCGGCATCGTGTTGCTCTTCGGTTGATAGCAGCATGGCTTGACGTCAAGTGGATCAAAATGgttagttaagttattctttcttctcagtgtcgcagagtgaaaattggttccagtttaatctcaattaaaaagaatgacctgagatcatccaagagagaaacagaaactcataactcatctgtatgcttgtatttgcgcatatctcaaattgacttctaatcatcaatcctcgcactatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G092776_T07 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g02170.1 (Oryza sativa), 5'ss of exon 3
GGACAGGAAGTCGTCTCACTTCAGGAAGGGCTATGATGCTCGGCATCGTGTTGCTCTTCGGTTGATAGCAGCATGGCTTGACGTCAAGTGGATCAAAATGgttagt-taagttattctttcttctcagtgtcgcagagtgaaaattggttccagtttaatctcaattaaaaagaatgacctgagatcatccaagagagaaacagaaactcataactcatctgtatgcttgtatttgcgcatatctcaaattgacttctaatcatcaatcctcgcactatag
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GGACAGAAAATCAACCCGCTTCAGAAAGGGTTATGATGCTCGGCATCGTGTTGCTCTTCGGCTGCTATCTACATGGCTTGATGTGAAGTGGATCAAAATGgtttgtacagactaaacttttttg--gattcagcagagtaa--------------tcactatgggtaccaaacaatatcctaaggcaattaaagaaaaaag----aacccccaatgttttt-catgttt-------------caccaaatttgtcaccaaccatgctttttcgc--tgcag
upper sequence: GRMZM2G092776_T07 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA02G05680.1 (Glycine max), 5'ss of exon 3
-GGACAGGAAGTCGTCTCACTTCAGGAAGGGCTATGATGCTCGGCATCGTGTTGCTCTTCGGTTGATAGCAGCATGGCTTGACGTCAAGTGGATCAAAATGgttagttaagttattctttcttctcagtgtcgcagagtgaaaattggttccagtttaatctcaattaaaaagaatgacctgagatcatccaagagagaaacagaaactcataactcatctgtatgcttgtatttgcgcatatctcaaattgacttctaatcatcaatcctcgcactatag
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AGGTGAAGATATTGGG-CGGAGAAGGAAGGGCTATGATGCTCGACATCGTGTGGCTCTGCGGTTGCTGGCAACATGGCTTGATGTCAAGTGGACAAAAATGgtttgtatgatgaatctt-------------gtagtctggaactttatgtga--ttgactc--attggta--aataacttgtcat-atgttggagatcatgagatatgagtgccatggtt------------------------------------------------------------
upper sequence: GRMZM2G092776_T07 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA16G24310.1 (Glycine max), 5'ss of exon 3
-GGACAGGAAGTCGTCTCACTTCAGGAAGGGCTATGATGCTCGGCATCGTGTTGCTCTTCGGTTGATAGCAGCATGGCTTGACGTCAAGTGGATCAAAATGgttagttaagttattctttcttctcagtgtcgcagagtgaaaattggttccagtttaatctcaattaaaaagaatgacctgagatcatccaagagagaaacagaaactcataactcatctgtatgcttgtatttgcgcatatctcaaattgacttctaatcatcaatcctcgcactatag
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AGGTGAAGATGTCGGG-CGGAGAAGGAAGGGCTATGATGCTCGGCATCGTGTGGCTCTGCGGTTGCTGGCAACATGGCTTGATGTCAAGTGGACAAAAATGgtttgtatgatgaatctt-------------gtagtgtggaactttatgtga--ttgac--tgattggta--aataacttgtcat-atgttggagatcatgagatatgagtgccatagtt------------------------------------------------------------
upper sequence: GRMZM2G092776_T07 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA06G02950.1 (Glycine max), 5'ss of exon 3
GGACAGGAAGTCGTCTCACTTCAGGA-AGGGCTATGATGCTCGGCATCGTGTTGCTCTTCGGTTGATAGCAGCATGGCTTGACGTCAAGTGGATCAAAATGgttagttaagttattctttcttctcagtgtcgcagagtgaaaattggttccagtttaatctcaattaaaaagaatgacctgagatcatccaagagagaaacagaaactcataactcatctgtatgcttgtatttgcgcatatctcaaattgacttctaatcatcaatcctcgcactatag
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-TGTAGCAGATACTGACAAGTCAAGGCAGGGCTATGATGCTCGTCACCGTGTGGCTCTGCGGTTGCTTGCTGTATGGCTTGATGTCAAATGGAATGAAATGgtccgt------gtgctt------------------ggaacactagcatgcatttcaaacaccatatggtattatatgttgcgtttgt--gatgtgtgaatcttatttgttacgttttttatgtgt------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211441370|gb|FL044172.1|FL044172EST: CAAGTGGATCAAAATG GAAGCTATGGAGGTGATGGTCGCATGCTCTGCCATGGCTGCGGCAAAAGAA
genomic: CAAGTGGATCAAAATGgttagttaag ... cgcactatagGAAGCTATGGAGGTGATGGTCGCATGCTCTGCCATGGCTGCGGCAAAAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGACAGGAAGTCGTCTCACTTCAGGAAGGGCTATGATGCTCGGCATCGTGTTGCTCTTCGGTTGATAGCAGCATGGCTTGACGTCAAGTGGATCAAAATGgttagttaagttattctttcttctcagtgtcgcagagtgaaaattggttccagtttaatctcaattaaaaagaatgacctgagatcatccaagagagaaacagaaactcataactcatctgtatgcttgtatttgcgcatatctcaaattgacttctaatcatcaatcctcgcactatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA