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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAGTTCACCAGAAGAGCAGGAAACTTATATAAGGAGCTGGCTGGAGGAAAGACTAGGATTTGAATCAAACTTCAAGATATCCTTTTATCCTGGCAAGgttacatttaatgtgtattatgtcaaatactcaaattcgatattttcaatgacttgatattgacatgttatatgttttacag

Basic information

species Zea mays
transcript GRMZM2G092588_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092588_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g33580.1 (Oryza sativa), 5'ss of exon 4
GTTCAGTTCACCAGAAGAGCAGGAAACTTATATAAGGAGCTGGCTGGAGGAAAGACTAGGATTTGAATCAAACTTCAAGATATCCTTTTATCCTGGCAAGgttacatttaatgtgtattatgtcaaatactcaaattcgatattttcaatgacttgatattgacatgttatatgttttacag-----
 |||||||||||||||||||||||||| ||||||| ||  |||||||||||||| || || ||||||||||||||||||||||| ||||||||||||||||| ||   ||   |  ||| | |       ||||  |  |||| || ||| |||  |   ||| ||| | ||||   |||       
CTTCAGTTCACCAGAAGAGCAGGAAACATATATAAAGAAGTGGCTGGAGGAAAGGCTTGGGTTTGAATCAAACTTCAAGATATCATTTTATCCTGGCAAGgtaac---tatcatacatttttttg-----tcaaggtgcatatcttgaataactcaac--tgatatgctgtatgccgtaccctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13516141|gb|BG518417.1|BG518417
EST:     AAAGACTAGGATTTGAATCAAACTTCAAGATATCCTTTTATCCTG-----                         TTCTCAAAAGAGCGGCGTAGCATCATTCCAGCTGGTGATACGTCTCAGTTC
genomic: AAAGACTAGGATTTGAATCAAACTTCAAGATATCCTTTTATCCTGGCAAGgttacattta ... tgttttacagTTCTCAAAAGAGCGGCGTAGCATCATTCCAGCTGGTGATACGTCTCAGTTC
EST: gi|211377158|gb|FL183054.1|FL183054
EST:     GATATCCTTTTATCCTGGCAAG                         TTCTCAAAAGAGCGGCGTAGCATCATTCCAGCTGGTGATACGTCTCAGTTC
genomic: GATATCCTTTTATCCTGGCAAGgttacattta ... tgttttacagTTCTCAAAAGAGCGGCGTAGCATCATTCCAGCTGGTGATACGTCTCAGTTC