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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATAGCATATTTGATGGCAATATTAAAGTCAACAGgtatgtttatcagtttttttctttttgttgttttgttcttcctggagaattgttatctattccggtcatttacctgaccagcattgcacagatttctagt...

Basic information

species Zea mays
transcript GRMZM2G092533_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092533_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g03650.1 (Oryza sativa), 5'ss of exon 2
---------------------------------------------------------------GAAATAGCATATTTGATGGCAATATTAAAGTCAACAGgtatgtttatcagtttttttctttttgttgttt------tgttcttcctg-gagaattgttatctattc-cggtcatttacctgaccagcattgcacagatttctagt
                                                               | ||| ||||||||||||| ||||| ||||| |||||||||||  ||||| ||  |||| |    | |||      | || ||      | || | |||   |||  | | |||||      ||| || |||| | ||       
TTATACTTGATCACCCAAGAGGTCGTTCACAACAGATACATAGATTGATTGCTTCTGGTACAGGGAATGGCATATTTGATGGAAATATCAAAGTGAACAGgtatgtg-atcagattacttctgtgaagtatttcaactgtattattttgacaaaaagtattactgattttcagccattt-ttgagccatcagtgcatatatg------