Sequence
atgc intronic sequence ATGC exonic sequenceCTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACTTTGCTTGGGCAGCCCAACCTGTTTATAAGCATGAAGAGGCCCAACAAGAGGCATGGAAAGgtatgttctacttattctgttgtaccttctcttttgttagtgtgataacatacagctcatgtatgagtttggtagttctttaatgctagagatttgtcat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G092120_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g62800.1 (Oryza sativa), 5'ss of exon 4
CTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACTTTGCTTGGGCAGCCCAACCTGTTTATAAGCATGAAGAGGCCCAACAAGAGGCATGGAAAGgtatgttctacttattctg------ttgtaccttctcttttgttagtgtgataacatacagctcatgtatgagtt-tggtagttctttaatgctagagatttgtcat
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CTTCTGGAGGTTAATAGAATGCTCAGAGCCGGCGGTTATTTTGCTTGGGCAGCACAGCCTGTTTATAAGCATGAAGAGGCTCAGCAAGAAGCATGGAAAGgtatgcattatttcctatgtacccctagtaatttttgttccattgtgggggaaacacactagtctttcatttattctgttggtattttcccacatgacga-------
upper sequence: GRMZM2G092120_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA11G34430.1 (Glycine max), 5'ss of exon 4
CTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACTTTGCTTGGGCAGCCCAACCTGTTTATAAGCATGAAGAGGCCCAACAAGAGGCATGGAAAGgtatgttctacttattctgttgtaccttctcttttg--ttagtgtgataacatacagctcatgtatgagtttggtagttctttaatgctagagatttgtcat
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CTGCTTGAAGTCAATAGGATGCTAAGAGCAGGAGGGTACTTTGTCTGGGCTGCCCAGCCGGTTTATAAGCATGAAGAAGTTTTAGAAGAACAATGGGAAGgtgcagttaaattttttgaagcttttttagctattgagttagtgtatttaatgatagctctattttctacctttttgt--attaatattagcattgtatgaa
upper sequence: GRMZM2G092120_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA18G03890.2 (Glycine max), 5'ss of exon 4
-CTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACTTTGCTTGGGCAGCCCAACCTGTTTATAAGCATGAAGAGGCCCAACAAGAGGCATGGAAAGgtatgttctacttattctgttgtaccttctcttttgttagtgtgataacatacagctcatgtatgagtttggtagttctttaatgctagagatttgtcat-----
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GCTTCTTGAAGTTAATAGGATGCTAAGAGCAGGAGGGTACTTTGTCTGGGCTGCCCAGCCAGTTTATAAGCATGAAGAAGTTTTAGAAGAACAATGGGAAggtata----attaaactttttgaaccctttttagctatggagttagtgtatttaagg-atagatctattttgtaccttcatg-tattaaatattaatactagcat
upper sequence: GRMZM2G092120_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA18G03890.1 (Glycine max), 5'ss of exon 4
CTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACTTTGCTTGGGCAGCCCAACCTGTTTATAAGCATGAAGAGGCCCAACAAGAGGCATGGAAAGgtatgttctacttattctgttgtaccttctcttttg--ttagtgtgataacatacagctcatgtatgagtttggtagttctttaatgctagagatttgtcat
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CTTCTTGAAGTTAATAGGATGCTAAGAGCAGGAGGGTACTTTGTCTGGGCTGCCCAGCCAGTTTATAAGCATGAAGAAGTTTTAGAAGAACAATGGGAAGgtataattaaactttttgaaccctttttagctatggagttagtgtatttaaggatagatctattttgtacctt-catgtattaaatatta-atactagcatt
upper sequence: GRMZM2G092120_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT1G77260.1 (Arabidopsis thaliana), 5'ss of exon 4
CTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACTTTGCTTGGGCAGCCCAACCTGTTTATAAGCATGAAGAGGCCCAACAAGAGGCATGGAAAGgtatgttctacttattctgttgtaccttctcttttgttagtgtgataacatacagctcatgtatgagtttggtagttctttaatgctagagatttgtcat
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CTTCTTGAAGTTAATAGAATGCTTAGAGCAGGAGGCTACTTTGTTTGGGCTGCACAACCCGTTTACAAACATGAGGATAACTTGCAAGAGCAGTGGAAAGgtttg-------tatattattcaacaaaataatttgtc--tgctatggagtttaactaaaatatgggtgttgcttctgcgctttgatt-atctttttcag
upper sequence: GRMZM2G092120_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT2G39750.1 (Arabidopsis thaliana), 5'ss of exon 4
CTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACTTTGCTTGGGCAGCCCAACCTGTTTATAAGCATGAAGAGGCCCAACAAGAGGCATGGAAAGgtatgttctacttattctgttgtaccttctcttttgttagtgtgataacatacagctcatgtatgagtttggtagttctttaatgctagagat--ttgt-cat-
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CTCCTTGAGATCAATAGAATGCTGCGCGCTGGAGGATATTTTGCTTGGGCTGCACAGCCTGTTTATAAGCATGAACCCGCTTTGGAAGAACAATGGACAGgtaacatccttttaatctgctttgagtaggcctgtaattcagggttgataaaattctttggtcttaata----aactttttggagttagtaatcattgtacgtg
upper sequence: GRMZM2G092120_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT5G06050.1 (Arabidopsis thaliana), 5'ss of exon 4
CTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACTTTGCTTGGGCAGCCCAACCTGTTTATAAGCATGAAGAGGCCCAACAAGAGGCATGGAAAGgtatgttctacttattctgttgtaccttctcttttgttagtgtgataaca-tacagctcatgtatgagtttggt----agttctttaatgctagagatttgtcat
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CTCCTTGAAGTTAATAGGATGCTTCGTGCCGGAGGATATTTTGTTTGGGCAGCACAACCTGTATATAAGCATGAAAAGGCCTTGGAAGAACAGTGGGAAGgtatcatccgtgcaccttaatatatcatttcagc-attcatgaagtgtcagttttgcctatacaaacattccaaccaaagctcgtttttgctgaaaactct----
upper sequence: GRMZM2G092120_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv13s0019g02250.t01 (Vitis vinifera), 5'ss of exon 4
CTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACTTTGCTTGGGCAGCCCAACCTGTTTATAAGCATGAAGAGGCCCAACAAGAGGCATGGAAAGgtatgttctacttattctgttgtaccttctcttttgttagtgtgataacatacagctca---tgtatgagtttggtagtt-ctttaatgctagagatttgtcat
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CTGCTTGAGGTAAATAGAATGCTTCGGGCAGGAGGATACTTTGCTTGGGCAGCACAGCCAGTTTATAAGCATGAAGAAAACCTAGAAGAACAGTGGAAAGgtatcattttctgggactcttattcaaaataagctattgatatcttatcaaagaagtaagcctattgaaaagttatggtcactttaat--tacctttttgag--
upper sequence: GRMZM2G092120_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv18s0001g01600.t01 (Vitis vinifera), 5'ss of exon 4
CTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACTTTGCTTGGGCAGCCCAACCTGTTTATAAGCATGAAGAGGCCCAACAAGAGGCATGGAAAGgta---tgttctacttattctgttgtaccttctcttttgttagtgtgataacatacagctcatgtatgagtttggtagttctttaatgctagagatttgtcat---
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CTTCTTGAGGTCAACAGGATGCTAAGGGCAGGAGGATACTTTGCTTGGGCTGCACAGCCTGTTTATAAACATGAAGGGAACCTCCAAGAACAGTGGAAAGgtagctcatccaatacatcctattcaaagtatagatacagatgtttg-tggctagcactatctttctgaatt-----gctttttgaagttttatattctttatcttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
Nothing found
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACTTTGCTTGGGCAGCCCAACCTGTTTATAAGCATGAAGAGGCCCAACAAGAGGCATGGAAAGgtatgttctacttattctgttgtaccttctcttttgttagtgtgataacatacagctcatgtatgagtttggtagttctttaatgctagagatttgtcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA